Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq2671 176 8e-39 seq7045 145 1e-29 >seq1 Length=128069 Score = 188 bits (208), Expect = 1e-42 Identities = 550/844 (65%), Gaps = 13/844 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| | || |||||| ||||||||| | ||||| | Sbjct 110946 TGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACGGCCGAAGAGCTCGATCTAGTG 111005 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| | || | | |||||| || || ||||| ||||| Sbjct 111006 CACGACCTCAAGGACTGGGGCAACCTCACGGATAACGAGCGCCACTTCATCAAGCACGTG 111065 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCAC 25658 | || |||||||| ||| || || || || |||||||| || || | || |||| Sbjct 111066 CTCGCCTTCTTTGCGGCCAGCGACGGCATCGTCAACGAGAACTTG-GCAATGAACTTCAG 111124 Query 25659 CAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAA 25717 || ||||||||| ||| | |||| ||| ||||| || |||||||| ||||| || | Sbjct 111125 CAACGAAGTGCAGGTACCAG-AGGCGCGGTGCTTCTATGGCTTCCAGATCGCCATTGAGA 111183 Query 25718 ATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGA 25777 | | ||||| ||||| || | |||| | |||||||| | |||| | |||| Sbjct 111184 ACATCCACTCCGAGGTCTACTCGCTGCTTATTGACACGTACATCAAGGACGCGGTGGAGA 111243 Query 25778 GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGG 25837 || | ||| | |||| || || ||| || | |||||| ||| || | |||| Sbjct 111244 AGGACCACCTGCTGCGTGCTATTGACACCATCCCATGTGTCAAGAAGAAAGCACACTGGG 111303 Query 25838 CCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 | | ||| | || | | | || ||| | ||||| ||| | ||||| || Sbjct 111304 CTCTCCGATGGTGCGACCCTCGTGTGTCCT-CGTATCCGGAGCGTCTGCTCGCCTTCGCG 111362 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAA 25955 || ||||| |||||||| ||| || || || ||| ||||||||||||||||| || Sbjct 111363 GCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCG 111421 Query 25956 GGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 || |||||| || || || || ||||||||||| ||| | |||||||| | || Sbjct 111422 CGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCA 111481 Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGAC 26075 || || ||||||||||| | ||| || | | || | || || | |||| | Sbjct 111482 CACGGACTTTGCCTGCCTCATGTACTCGAAGCTCGTG----AACAAGCTGCCGGAGAGCC 111537 Query 26076 -CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNN 26134 ||| || ||| | || ||||||| ||||||| | |||||| Sbjct 111538 GCGTGCACGAGATCGTGCGTGATGCTGTGGTGATCGAGCATGAGTTTGTGCGCGATTCGC 111597 Query 26135 NNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGG 26194 | || |||||| | |||||| |||| |||||||||| |||| Sbjct 111598 TGCCGGTGGAGCTCATCGGTATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGG 111657 Query 26195 CCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCG 26254 | |||| || || | | ||||||| | ||| |||||| || ||||| |||| Sbjct 111658 CTGACCGCCTTCTCTACTCGCTGGGAGTTTCCAAGATCTACAACGCGAAGAACCCTTTCG 111717 Query 26255 ACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCG 26314 ||| ||||| | || ||| || | || |||||||||||||| || ||| | || |||| Sbjct 111718 ACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCG 111777 Query 26315 ACTA 26318 | || Sbjct 111778 AGTA 111781 >seq2671 Length=8519 Score = 176 bits (194), Expect = 8e-39 Identities = 764/1191 (64%), Gaps = 57/1191 (5%) Strand=Plus/Minus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 |||| || || |||||||| || || || | || | ||| | | ||||||| | | Sbjct 5998 CGTCAGCGAGACCCTGTACGCCAATCCCCACAGGGCGGTGGCGCATGTTGGACTTGCGAG 5939 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 ||||| ||| || || |||||||||| |||| ||||| || || | || | |||| Sbjct 5938 CTTCTACCACCGGGTAGTAGTTGACGTCAATCACCTTGTTCAGATTGCGGGTCACCACTT 5879 Query 221628 TAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTT 221687 | ||||||| ||| ||||| | |||||||| ||| || || Sbjct 5878 TGGTCACCTCGTACAGTTTCTGATAGTTGAACAC---------GCCATC---------TT 5837 Query 221688 CCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG- 221746 |||| || | |||||||| |||| ||| ||||| ||||| || || || | Sbjct 5836 CCACGAACTTGGGCAGGGCAACAGACGCCAAGTTGCACACCGCCACTTCATC--TGGAGA 5779 Query 221747 -GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTG 221805 || |||| || | ||| || | ||||||| | || || ||||| | | || Sbjct 5778 CGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGAATCGTGCCCAGATTCTGCTG 5719 Query 221806 ATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 || |||||||| ||||| ||||| ||||| ||||| || || | || || || | ||| Sbjct 5718 GTTCGACTTGCGGTTGGCCGCGTCTTTGTAAAGCATGAACGGCACTCCTGTTTCAATCTG 5659 Query 221866 AGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCG-TCCTCTTGACTGCAC--- 221921 ||| ||| || ||| |||| ||| | || | | | ||| ||||| Sbjct 5658 AGCGTCCAAGATGGCAAACCACAGTTG-CTG---CGCATTGATGGTTTTGCGTGCACGTC 5603 Query 221922 CCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCA 221981 |||| |||||| ||| |||||| | ||||||| || || | ||||| | Sbjct 5602 CCTC---CTTTTCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCGTAAA 5546 Query 221982 GGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTG---TTGTCTTTGACCCTCT 222038 | || ||| ||| || | || |||||| |||| ||| | | ||||||| Sbjct 5545 GACCCGGAGCTTCATTGGGGCAGAACAAACTCCA---CTTGCCATTGGCCTCCACCCTCT 5489 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 |||||| || || |||| ||| ||||| | || | || | | || ||| ||| Sbjct 5488 TCATGAACAGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACTCGT 5429 Query 222099 CGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGAT 222158 ||||| ||| || | ||| |||| ||||| || | ||| ||||||||||| |||| || Sbjct 5428 TGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAAT 5369 Query 222159 AGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGT 222218 | || || | | ||| || ||| || ||||| ||||| | | || ||| Sbjct 5368 ACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGT 5309 Query 222219 TGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTAC 222277 |||| | ||| || | || | | |||||||| ||| ||||||||||| |||||| Sbjct 5308 TGAATACGCGCAGCATGGGGATGATGCCGTTGGA-CGAGCCGTTGGTGCCGCGAATGTA- 5251 Query 222278 GCACCGCCGG-CCCTCAGGTTACTG-GCAGAC--ATGCCGATACCACCGGCGTGTTTCGA 222333 | | || ||| || | || ||| | |||||||| || || || || || Sbjct 5250 --GCTGTTGGTAGCTC-GGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGA 5194 Query 222334 GATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTT 222393 ||| ||||| |||||| ||||| ||| ||||| || ||||| || | | | Sbjct 5193 GATGCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGC 5134 Query 222394 CAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACT 222453 ||||| || || ||||||| ||| | | | | |||||||||||||||||| | Sbjct 5133 TAGCAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGT 5074 Query 222454 GGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT-CTACGACTCTGGCGATGT 222512 ||| || || ||| | | ||||| || |||||||||| | || | | | ||||| Sbjct 5073 GGCATGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCCTG-GATGT 5015 Query 222513 TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---CCACAG 222569 | | ||| || || || | |||| ||| | ||| |||| || |||| Sbjct 5014 CGGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGCGGCCGCTCTACCACTT 4955 Query 222570 GACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA 222629 || || || | || ||||| | | ||||| |||||||| || ||||||| | Sbjct 4954 TGCCGTTCACGCGGAAG---AGGTAGCCTCTCTCCAGCGTCTTGAAGCCGAAGTAGTCGT 4898 Query 222630 GGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTGCT 222680 || ||||| | | |||| | | ||||| || ||||| |||||||| Sbjct 4897 ACTCGAAGTCGCGGTCGTGGATGATGGCGGAGTTGAGCTCGTCCTTGTGCT 4847 >seq7045 Length=3816 Score = 145 bits (160), Expect = 1e-29 Identities = 547/854 (64%), Gaps = 21/854 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||| | ||| ||||||||||||| || || || |||||| ||||| || | ||| Sbjct 3310 GATGTGTGGCAGATGTACAAGAAAGCGGAAGCTTCGTTCTGGACAGCCGAGGAACTCGAT 3251 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| | | | ||| | || | | | |||| || || |||| Sbjct 3250 CTCGTGCACGACCTCAAAGATTGGGAGAAACTCACGGATAATGAGCGCCACTTCATCAAA 3191 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | ||||| || || ||| |||||| || || || || |||||| | || Sbjct 3190 CACGTGCTCGCATTTTTCGCTGCCAGTGATGGGATCGTCAATGAAAATCTGGCCATGAAC 3131 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||||||| | | || || | | || ||||||||||||||||| ||||| Sbjct 3130 TTCAGCAACGAAGTGCAGGTGCCTGAAGCTCGA-TGCTTCTACGGTTTCCAGATCGCCAT 3072 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| || || || | ||| | ||||| || | || | Sbjct 3071 TGAGAACATCCACTCCGAAGTCTACTCACTGCTCATTGACACGTATATCAAGGATACTGT 3012 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| | | ||| | ||||||||||| || ||| || | | | ||| ||| Sbjct 3011 GGAGAAAAACTATCTGCTGCGTGCCATCGAGACAATTCCCTGCGTTCAAAAGAAAGCGAA 2952 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGC 25889 ||||| |||| ||| | || | | | | ||| | ||||| || | || Sbjct 2951 CTGGGCATTGAAATGGTGCGAC---CCGCGTGTGTCGTCCTACCCGGAGCGATTGCTGGC 2895 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 |||||| | ||||| || ||||| || || ||||| ||| || || |||||||||| Sbjct 2894 GTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGGGTCGTTCTGCAGC-ATTTTCTGGCTCA 2836 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || |||||| || || ||| || || ||| | ||||| | ||||| | Sbjct 2835 AGAAGCGAGGCCTCATGCCTGGTCTCAGCTTCTCGAATGAGATGATCAGTCGTGACGAAG 2776 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 || | |||| ||| || |||||||| | ||| || | ||| || |||||| | Sbjct 2775 GTATGCACACAGACTTCGCCTGCCTCATGTACTCGA---AATTGGTCAACAAACTACCAG 2719 Query 26069 AAGAGACCGTCTACAGTA--TCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 || || | || |||| | ||||| || || |||| ||| || | ||||| Sbjct 2718 AA-AGTC-GTGTACACGAGATCATCCGCGATGCGGTGGTGATTGAACACGAGTTCGTCTG 2661 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | || ||| |||| |||||||| Sbjct 2660 CGAATCTCTTCCTGTGGAGTTGATCGGCATGAACTCGACTCTAATGTGCCAGTACATTGA 2601 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA- 26245 || ||| || |||| |||||| | |||||| | ||| | |||| ||| | | Sbjct 2600 GTTTGTCGCTGACCGCTTGCTGTACTCGCTGGGTGTGTCCAAGATATACA--ACGTCAAG 2543 Query 26246 -ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||| ||||| | || || ||| | || ||||||||||||||||||||| Sbjct 2542 AACCCGTTCGACTGGATGGATATGATCTCATTGCAGGGAAAGACCAACTTCTTTGAAAAG 2483 Query 26305 AGGGTCGGCGACTA 26318 | || || || || Sbjct 2482 CGTGTGGGGGAGTA 2469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928565693748160