Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq772 114 8e-20 seq321 113 3e-19 seq238 113 3e-19 >seq772 Length=17468 Score = 114 bits (126), Expect = 8e-20 Identities = 355/547 (65%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || || ||||| | || ||||| |||| ||| | Sbjct 5418 TTGGTATTGATCTGGGGACGACGTATTCGTGTGTTGGCGTGTGGCAGAATGACCGAGTGG 5359 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || ||||| || || || || ||| | || || ||||| ||||| | || || || | Sbjct 5358 AGATCATTGCGAACGATCAGGGGAATCGTACGACCCCATCGTATGTGGCGTTCACAGACA 5299 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | || ||||| |||||||| || | |||| || || | || || Sbjct 5298 CAGAGCGCCTCATTGGCGATGCTGCAAAGAACCAAGTGGCTATGAACGCGCACAACACGG 5239 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || | ||| | ||||| || || || || |||| | || || || || | Sbjct 5238 TGTTCGACGTCAAACGCTTGATCGGACGCAAATTCACTGATCTCGAAGTGCAGTCGGACA 5179 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATG---TTGGTGGTAAACCATATATAGAAG--C 474627 | |||||||| || || |||| | ||| | ||||| | || | | | Sbjct 5178 TTAAACATTGGCCATTCAAAGTGACTCGCGGGCTTGAGAGCAAACCCCAAATTGTCGTGC 5119 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | | || | || || | || ||| |||||| | || || || ||||| | Sbjct 5118 AGTTCAAG--GGCGAGTCCAAGACATTCCAACCGGAGGAGATCTCGTCCATGGTGCTGAT 5061 Query 474688 CAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 ||||||| | || || | || |||| | |||| | | ||||| | || Sbjct 5060 CAAAATGCGCGAGACAGCAGAAGCCTACATTGGGAAGCAAGTGAAGAACGCAGTGGTGAC 5001 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 ||||||||||||||||||||||| || || ||||| || |||||||| ||| |||||| Sbjct 5000 AGTTCCAGCATATTTTAATGATTCGCAGCGCCAAGCGACCAAAGATGCCGGAGTAATTGC 4941 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||| | || || | ||||| || ||||| || || || || || |||| |||||||| Sbjct 4940 TGGTTTGAACGTGCTGCGTATCATCAATGAGCCGACGGCTGCTGCTATTGCCTATGGTCT 4881 Query 474868 TGATAAG 474874 || ||| Sbjct 4880 AGACAAG 4874 >seq321 Length=26016 Score = 113 bits (124), Expect = 3e-19 Identities = 119/155 (77%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| || || || || ||||| || || ||||||||||| |||||||| Sbjct 10039 ATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 9980 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||| |||||||| || || ||| ||||| ||| | | || | || |||||| Sbjct 9979 GTCCTGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACG--TCCAGGGTA 9922 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| || |||||||| |||||||| || Sbjct 9921 ATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTG 9887 >seq238 Length=29854 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| ||||| || || || || || || ||||| || || ||||||||| Sbjct 21012 TCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTG 21071 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 |||||||||||||| ||||| || || | || | || || ||||||||| Sbjct 21072 TCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATA 21131 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || |||||||| |||||||| || Sbjct 21132 GTTTTACCCGTAAGAGTCTTGACGAAAATCTG 21163 Score = 87.8 bits (96), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||| || |||||||| || |||||||| |||||||||||||| Sbjct 21467 ATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTT 21526 Query 480677 GTCTTGAATCTTTTGTTTGAC 480697 ||| ||||| || || ||||| Sbjct 21527 GTCCTGAATTTTCTGCTTGAC 21547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267148050652772