Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7045 125 9e-24 seq1 100 3e-16 seq43 87.8 2e-12 >seq7045 Length=3816 Score = 125 bits (138), Expect = 9e-24 Identities = 358/534 (67%), Gaps = 26/534 (5%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || || | ||||| ||||| |||||| ||||||||| ||| Sbjct 2989 GCCATCGAGACAATTCCCTGCGTTCAAAAGAAAGCGAACTGGGCATTGAAATGGTGCGAC 2930 Query 65056 ACAAA-GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| | | |||||||| | ||||| |||||||| Sbjct 2929 CCGCGTGTGTCG-TCCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTT 2871 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||| || ||||| |||||| |||| ||| | |||||||| || |||||||| || || Sbjct 2870 CTTTTCGGGGTCGTTCTGCAGCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCT 2811 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| ||||| | || || || || ||| | ||| || || ||| || Sbjct 2810 CAGCTTCTCGAATGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGCC-TG-- 2754 Query 65235 GCTCTTCAAG-ACTTTGCGTAATAG----ACCCACTACC-GAAA---CTATCCACGCCAT 65285 | ||| | ||| || ||| | || |||||| |||| | | |||| || Sbjct 2753 ---CCTCATGTACT---CGAAATTGGTCAACAAACTACCAGAAAGTCGTGTACACGAGAT 2700 Query 65286 CGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATC 65344 | | || ||||| | |||||| | | |||| ||| || | || || ||| | Sbjct 2699 CATCCGCGATGCGGTGGTGATTGAACACGAGTTCGTCTGCGAATCTCTTCC-TGTGGAGT 2641 Query 65345 TCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCC 65404 | ||||| |||||||| |||| | |||||||||||| ||| | || || | | Sbjct 2640 TGATCGGCATGAACTCGACTCTAATGTGCCAGTACATTGAGTTTGTCGCTGACCGCTTGC 2581 Query 65405 TCAAACAAGTTGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAA 65463 | || | |||| ||| | || | |||| ||||| || || |||| ||||| Sbjct 2580 T-GTACTCGCTGGGTGTGTCCAAGATATACAACGTCAAGAACCCGTTCGACTGGATGGAT 2522 Query 65464 AACATTAGCCTTG-ATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | | | | ||| | || ||||||||||||||||| ||||| || ||||| || Sbjct 2521 ATGA-TCTCATTGCAGGGAAAGACCAACTTCTTTGAAAAGCGTGTGGGGGAGTA 2469 >seq1 Length=128069 Score = 100 bits (110), Expect = 3e-16 Identities = 293/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || || ||| ||||| || ||||||||||| || || |||||| | Sbjct 111342 GAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 111401 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | ||| | |||||||| ||||||||||| || || | ||||| || || || ||| Sbjct 111402 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 65197 TCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 ||| || ||||| | ||| ||| |||||| || ||| | | | || | | Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGCC-TG--CCTCATGTACTCGAAGC-TCGT 111517 Query 65257 AGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 || || ||| | | |||| |||||| || || || | ||| ||| | Sbjct 111518 GAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGTGATGCTGTGGTGATCGAGCA 111577 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTC 65372 | ||| | || | || || | ||||||||||||||||| | |||| Sbjct 111578 TGAGTTTGTGCGCGATTCGCTGCCGGTGGAGCTCATCGGTATGAACTCGGGCCTCATGTG 111637 Query 65373 CGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTT 65431 | |||||||||||| ||| | || || || ||| || | |||| || | || | Sbjct 111638 CCAGTACATTGAGTTCGTGGCTGACCGCCTTCTC-TACTCGCTGGGAGTTTCCAAGATCT 111696 Query 65432 GGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACT 65491 ||||||||||| || || |||| ||||| | || || | || |||||||||| Sbjct 111697 ACAACGCGAAGAACCCTTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACT 111756 Query 65492 TCTTTGAGAAGCGAGTTGGGGACTA 65516 |||| |||||||| || || || || Sbjct 111757 TCTTCGAGAAGCGTGTGGGCGAGTA 111781 >seq43 Length=56266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 ||||| | |||||| | || || || ||||| || ||| | || || || || || || Sbjct 26278 AGTGTGCACTCATTTTGACGGAAGGCGATTCCGCCAAAGCACTTGCAGTGGCAGGCCTTG 26219 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 | || ||||| || ||||| |||||||| ||||| |||||||||||| | ||||| | Sbjct 26218 CAGTTGTTGGACGCGATCAGTACGGTGTTTTCCCTCTTCGCGGTAAACTTCTCAATGTGC 26159 Query 13725 GGGACGCTTCGGTGGCACAGCTC 13747 | || || | ||||| || ||| Sbjct 26158 GCGATGCAACAGTGGCGCAACTC 26136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596390338292320