Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq468 134 4e-26 seq2483 100 8e-16 seq96 98.7 3e-15 >seq468 Length=22156 Score = 134 bits (148), Expect = 4e-26 Identities = 197/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||||||||| ||||||||| | || || || ||||||||||| ||||| |||| Sbjct 8296 ACGACGCTGAATGTAACCAGTTTCGGCGGTCTTCACGGCTGTATCAATCAGACCTTCACG 8355 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 || |||||||| ||||| || | ||||| || | ||| | | | ||| | || Sbjct 8356 CCCGCCCATAGCGTGGAAAAAGAACTCTTGTGGAGTCAAACCCTTTAAATATGAGTTTTC 8415 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 |||||||| || ||| ||| | || |||| |||||||||| || | || Sbjct 8416 CACGAAACCTCGACTCTCCGGCCCAAGATCATCCTTGCCGTAGTGTGGCAGTGTGCGGTG 8475 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | | || ||||| || |||||||| |||||||| ||||| |||| || | ||| || Sbjct 8476 GTTGAAACCATATGGAATGCGCTTTCCTTCAACGTTTTGCTGACCCACACAGGCAATAAT 8535 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 |||||| ||||| ||| | | ||||||||||||| Sbjct 8536 CTGCGAGATATT--AATGAACGATCCCTTGGAGCCAG 8570 >seq2483 Length=8935 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||||||||||||||| || | ||| | |||||| || ||||| Sbjct 3644 CCGTGAGAGATCAGACAATCACGCTCCATTTCTCCCATACGCAAACCACCTTCACGAGCA 3585 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | ||| || ||||| || || || || || ||||| ||||| || | Sbjct 3584 CGACCTTCCATGGGCTGGCGCGTCAGCATAGTCACGGGACCACGCGAGCGCGAGTGGATC 3525 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||| | ||||||||||| | ||||||||||| | || ||||||||||| Sbjct 3524 TTATCGTCGACCATATGCTTCAAGCGCTGGTAGAACGTCGGTCCGATGAAGAT 3472 >seq96 Length=42084 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||||||||| ||| | || || || || || Sbjct 19851 CTTGATAGCCGAAGCCAGGGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATC 19910 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 19911 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCAGCCAGCACAACCTTCACCTTCTG 19970 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 19971 ACCACCGGACAG 19982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471364280639143