Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2671 129 5e-25 seq321 120 3e-22 seq238 111 1e-19 seq1885 86.0 6e-12 >seq2671 Length=8519 Score = 129 bits (142), Expect = 5e-25 Identities = 256/374 (68%), Gaps = 9/374 (2%) Strand=Plus/Minus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| |||||||| ||||||| ||| | || | | |||||| ||| Sbjct 5405 AGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACAGCGAACGAGCCTTTGCGT 5346 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||||| || || || |||| || | | | ||||||||||||| ||| || Sbjct 5345 TTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACGCGCAGCATGGGGATG 5286 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | ||| | | | |||||||||| || ||| |||||| |||||||| || ||| Sbjct 5285 ATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTAGCTCGGATGT--TGT 5228 Query 139669 ACAT--TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTC 139725 ||| |||||||||| || || | | ||||| || | |||| | || | | || Sbjct 5227 GCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTG 5169 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| || || ||| |||||| ||||| | | ||| ||||| ||||| | ||| Sbjct 5168 TCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACGACGACAACTGC 5109 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGAC 139845 || | ||||||||| |||||| || || | || |||||||| | | | |||| Sbjct 5108 GGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGAACTTCTGCGAC 5049 Query 139846 ATCAATTCGTACGT 139859 || | |||||||| Sbjct 5048 ATGAGCTCGTACGT 5035 >seq321 Length=26016 Score = 120 bits (132), Expect = 3e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || |||||||||||||| || || || || | || Sbjct 9884 ATGCAGATTTTCGTGAAGACTCTTACGGGTAAAACTATTACCCTGGACGTCGAGCCGTCC 9943 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| ||||| || ||||| || || Sbjct 9944 GACTCGATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 10003 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||| ||||||| ||||| || ||||| || ||| ||| ||| || ||||| Sbjct 10004 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCG---CACATTGAGCGATTAC 10060 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| | ||| | || |||| |||||| Sbjct 10061 AACATCCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGCCTGCGTGGAGGC 10111 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | ||||| || || || ||| | || || || | | Sbjct 9656 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9715 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | || | || || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 9716 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9775 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | |||||||| || || ||||| |||||| | | || || || ||| Sbjct 9776 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9835 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||||||||| |||| | || || ||| Sbjct 9836 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTCTCCGTGGTGGC 9883 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | ||||| || || || ||| | || || || | | Sbjct 9428 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9487 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | || | || || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 9488 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9547 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | |||||||| || || ||||| |||||| | | || || || ||| Sbjct 9548 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9607 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| | || | || || ||| Sbjct 9608 ATTCAGAAGGAGTCGACCCTCCACCTGGTGCTTCGCCTTCGTGGTGGC 9655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | ||||| || || || || ||||| || || | | Sbjct 9199 GATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACACTCGACGTGGAGCCGTC 9258 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||| || || ||||| |||||||| || || || || Sbjct 9259 GGACTCCATCGACAACGTGAAGCAAAAAATTCAGGACAAGGAAGGAATTCCCCCTGACCA 9318 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || ||||| |||||| | | || || || || Sbjct 9319 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGCGACTACAA 9378 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| | ||| | ||| | || |||| || ||| Sbjct 9379 CATCCAGAAGGAGTCGACGTTGCACCTTGTGCTTCGTCTGCGTGGTGGC 9427 >seq238 Length=29854 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 21623 GATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACGATCACGCTCGACGTGGAGCCGTC 21564 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || | || || || || || || ||||| |||||||| || || ||||| Sbjct 21563 GGATTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCCCCCTGATCA 21504 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| |||||| | | || ||||| || Sbjct 21503 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAA 21444 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| | || |||| || ||| Sbjct 21443 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTTCGTCTGCGTGGTGGC 21395 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || |||||||||||||| ||||| || ||| | | Sbjct 21166 ATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTCG 21107 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| |||||||| ||||| || || || || || Sbjct 21106 GACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 21047 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || || || ||||| | | || || || ||| Sbjct 21046 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAAC 20987 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| |||| |||| |||| || ||| Sbjct 20986 ATTCAGAAGGAGTCGACCCTGCACCTGGTTCTGCGTCTGCGTGGTGGC 20939 >seq1885 Length=10629 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 6056 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 6115 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 6116 GACAGCATTGACAACGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 6175 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 6176 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 6210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449762411394920