Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq238 91.5 1e-13 seq321 86.0 5e-12 >seq238 Length=29854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || |||||||| || || || | || |||||| Sbjct 21394 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACGATCACATTGGATGTAGAGCCTTCA 21335 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| | ||| | | || || ||||||||| |||||||||||| | ||| || || Sbjct 21334 GATTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAAGAAGGCATCCCCCCTGACCAG 21275 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | || || || ||||| ||||| | | || || || |||||| Sbjct 21274 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGTGACTACAAC 21215 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| ||||||||| | ||| Sbjct 21214 ATCCAGAAGGAATCCACGTTGCACCTCGTG 21185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| || || | |||||||| || || || |||| |||||| Sbjct 21625 AAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACGATCACGCTCGACGTGGAGCCG 21566 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | | || || ||||| ||| ||||| ||||| | ||| ||| Sbjct 21565 TCGGATTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCCCCCTGAT 21506 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | ||||| | || || || ||||| ||||||| | | || || |||||| Sbjct 21505 CAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTAC 21446 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || ||||| ||||| | | ||||| || || Sbjct 21445 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTTCGTCTGCGTGGTGG 21396 >seq321 Length=26016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || |||||||| ||||| || | || |||||| Sbjct 9428 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9487 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | | | | | || || ||||||||| ||||| |||||| | || || ||| Sbjct 9488 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9547 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| |||| || | ||| || || ||||| ||||||| | || || || |||||| Sbjct 9548 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9607 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 9608 ATTCAGAAGGAGTCGACCCTCCACCTGGTG 9637 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || |||||||| ||||| || | || |||||| Sbjct 9656 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9715 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | | | | | || || ||||||||| ||||| |||||| | || || ||| Sbjct 9716 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9775 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| |||| || | ||| || || ||||| ||||||| | || || || |||||| Sbjct 9776 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9835 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 9836 ATTCAGAAGGAGTCAACTCTTCACTTGGTG 9865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412720647603227