Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq1267 86.0 3e-12 >seq1267 Length=13579 Score = 86.0 bits (94), Expect = 3e-12 Identities = 323/499 (65%), Gaps = 21/499 (4%) Strand=Plus/Minus Query 66276 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66335 ||||||||| || || | | ||| | | || |||||||| | || || ||| |||| Sbjct 5285 CATCGACGCAGAACATGCTATCGACGCCCACTATGCCAAGGCATTGGGCGTTGACATCGA 5226 Query 66336 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66395 ||| || ||||| ||| | || || | || || ||||||| |||| ||| Sbjct 5225 TGCTCTCTACGTCTCGCAGCCAGACTCGGGTGAAGAAGCGCTAGAGATCGCTGACACCCT 5166 Query 66396 CGTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCG 66453 | || ||||| ||| || ||| || || | ||| |||||| || ||||| ||| Sbjct 5165 CATCCGATCTGG--AGCAGTGGATCTCGTGGTGCTGGACAGTGTGGCTGCGCTGGTACCG 5108 Query 66454 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66513 || || |||||||| ||||| || || ||| || | | || || || || || ||| Sbjct 5107 CGTGCGGAGCTCGAGGGCGAGATGGGAGACCAGCAGATTGCGCTCCAGGCACGACTTATG 5048 Query 66514 TCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTC 66570 ||||| ||||||| | ||||| | |||||| |||| ||| | | || Sbjct 5047 AGTCAGGCATTGCGCAAATTGACCGGATCGCTCTCCAAGTCCAATTGCACCATTA---TC 4991 Query 66571 TGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACC 66627 | |||||||| | || ||||| | || || | | || | ||||||| | Sbjct 4990 TTCCTCAACCAGATCCGTCAGAAGGTAGGGATCATCTTTGGGTC--GCCCGAAGT----C 4937 Query 66628 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66687 || | || || | ||| ||| | | ||||| || || || | ||| | || |||| Sbjct 4936 ACGTCCGGTGGTACGGCGTTGCGCTATTACGCGTCGGTGCGATTAGATATTCGCCGCAA- 4878 Query 66688 GCCACCGAG-AAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66746 | | ||| || ||||| || | | ||||| ||| || ||| ||||| | || Sbjct 4877 GACGGCGATCAAAGAAGGTGACCAAGTCGTCGGGAACGAAACGGTGGTTAAGGTGGCTAA 4818 Query 66747 GAACAAGCTGGCCCCGCCG 66765 |||||||||||| ||||| Sbjct 4817 GAACAAGCTGGCTTCGCCG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243698181525262