Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq238 95.1 1e-14 >seq238 Length=29854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||| | || || ||||| |||||| |||| ||| | Sbjct 21166 ATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTCG 21107 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || ||||||||| || || |||||| | ||| || ||| Sbjct 21106 GACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 21047 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || || || || || ||||||| || || ||||||||| Sbjct 21046 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAAC 20987 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || ||||| |||| || | |||| || || Sbjct 20986 ATTCAGAAGGAGTCGACCCTGCACCTGGTTCTGCGTCTGCGTGGTGG 20940 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||| || || || | || ||| || Sbjct 21394 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACGATCACATTGGATGTAGAGCCTTCA 21335 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | | || || || |||||| || ||||||||| | ||| || ||| Sbjct 21334 GATTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAAGAAGGCATCCCCCCTGACCAG 21275 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || || || ||||| ||||||| || || ||||||||| Sbjct 21274 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGTGACTACAAC 21215 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || ||||||||| | ||| Sbjct 21214 ATCCAGAAGGAATCCACGTTGCACCTCGTG 21185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398759938944871