Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq772 293 2e-73 >seq772 Length=17468 Score = 293 bits (324), Expect = 2e-73 Identities = 966/1482 (65%), Gaps = 31/1482 (2%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || ||||| || | || | ||| || | ||| |||||| | || | |||||| ||||| Sbjct 3951 GTCGATTTCTCCACCGCCGACACGTTCAAAATCCCATTGACGTCAACATCAAAAGTGACG 4010 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 |||||||| || | || | | | ||||||||||| |||| |||||| | ||||| Sbjct 4011 TCAATTTGGGGAATTCCACGCGGCATGGGTGGGATCCCGTCCAGATTAAACTTCCCCAGG 4070 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 || ||||| || || | |||||||| ||||| | |||||| ||| ||| | Sbjct 4071 AGATGGTTATCACGGGTCAAGGTGCGTTCACCTTCGAACACTTGGATCAACACTCCAGCT 4130 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 281649 || ||||||| ||||| | || ||| ||||| || ||||| || ||||| | Sbjct 4131 TGGTTATCTGCGTAAGTCGAGAACGA-CTGCGATTTCTTGGCAGGAACCGTAGTGTTACG 4189 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 ||| | |||||||| | ||||| || ||||| | || || || | || | || Sbjct 4190 TGGAATGAGCTTGGTCATGACTCCACCTGCAGTTTCCAGTCCGAGCGATAACGGGGCAAC 4249 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCTGC 281766 || | || | | || ||| | || || | || | || ||||| || || Sbjct 4250 GTCGAGAAGCAGCAGATCTTGCAACTTGGATGAAGATCCACTACCACTGAGAATTGCAGC 4309 Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826 ||||| | ||| || ||||| ||||| || || || |||| | | || | ||| Sbjct 4310 TTGAACGGTAGCCCCGTATGCCACAGCCTCGTCCGGGTTAATCGACTTGAACAGATCTTT 4369 Query 281827 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 281886 |||||||| || | | | || ||||| || || || | ||||| ||||| Sbjct 4370 GCCATTGAAGAAGTCCATCAACAACTGCTGCACCTTTGGGATTCGCGTCGATCCACCAAC 4429 Query 281887 TAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 281946 || ||||| || | ||| || || |||||| || || || ||||| | || Sbjct 4430 CAAGACAATCTCGTTCACTTGGCTCTTCGACAGTTTGGAGTCACGTAGAACTTGGGCGAC 4489 Query 281947 GGGTTCAA--GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 282004 ||||| | | | || || || | | ||| | || ||||| || | ||| Sbjct 4490 AGGTTCCATTGTCTTGCGA-AAGTAACTA-GCACACAAGTCCTCGAAACGTGCACGTGTA 4547 Query 282005 AGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT-TTGAGT 282063 | ||| ||| |||||||||| || ||||| ||||| | || || |||| ||| | Sbjct 4548 ATGGTGGAATTGAAATCAATTCCATCAAACAACGAATCGATCTCGAT-GTAGGCTTGCGC 4606 Query 282064 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT 282123 ||||| || | | || |||||||| || || || |||| || | || | || Sbjct 4607 CGAAGTGGACAAAGTGCGCTTAGCACGCTCGCAAGCAGTCCGGAGACGGCGAAGTGCAC- 4665 Query 282124 TGCTGATTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTT 282181 |||| || | | | || | || ||||||| |||||| || | ||| | | Sbjct 4666 -GCTGGTTCACTGACATATCCTTGCGATATTTTTGCTTGAACTCCGCCACAAAATACTCG 4724 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 |||||||| || ||||| |||||||||||||| | || | |||| ||| || | || Sbjct 4725 ACAAGACGGTTGTCAAAGTCTTCACCTCCCAAGTGCGTGTCACCTGCCGTCGCCTTCACC 4784 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || ||||||| | | || | |||||| ||||| || || | |||| Sbjct 4785 TCAAAGATGCCTTCTTCAATCGTTAGTAGCGACACATCAAACGTTCCGCCGCCTAGATCA 4844 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| | ||||| ||| | | | || | | |||||||| |||| ||||||| Sbjct 4845 AAAATCAACACATTGTGTTCGCCGCCCCGCTTGT---CTAGACCATAGGCAATAGCAGCA 4901 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || ||||| || || | || || || | |||||||||| ||| |||||||| Sbjct 4902 GCCGTCGGCTCATTGATGATACGCAGCACGTTCAAACCAGCAATTACTCCGGCATCTTTG 4961 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || ||||| | || ||||| ||||||||||| ||||| || | || || | | ||| Sbjct 4962 GTCGCTTGGCGCTGCGAATCATTAAAATATGCTGGAACTGTCACCACTGCGTTCTTCACT 5021 Query 282482 TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 | || ||||| || || |||||| | |||||| | | | ||| || || || Sbjct 5022 TGCTTCCCAATGTAGGCTTCTGCTGTCTCGCGCATTTTGATCAGCACCATGGACGAGATC 5081 Query 282542 TGTTCTGG--AGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTA 282598 | || || |||| | |||||| || |||| || || ||| | ||||| Sbjct 5082 TCCTCCGGTTGGAATGT--CTTGGACTCGCCCTTGAACTG-CACGACAATTTGGGGTTTG 5138 Query 282599 TTACCAA---CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT--T 282653 | ||| | | | ||||| |||||||||| ||| || || || || ||||| Sbjct 5139 CTCTCAAGCCCGCGAGTCACTTTGAATGGCCAATGTTTAATGTCCGACTG--CACTTCGA 5196 Query 282654 GGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAA 282713 | ||| | || | | || || || ||||| | || || | || ||| | || | Sbjct 5197 GATCAGTGAATTTGCGTCCGATCAAGCGTTTGACGTCGAACACCGTGTTGTGCGCGTTCA 5256 Query 282714 CTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 282773 || |||| | || || ||||| ||||| || | ||||| ||||| || | |||| Sbjct 5257 TAGCCACTTGGTTCTTTGCAGCATCGCCAATGAGGCGCTCTGTGTCTGTGAACGCCACAT 5316 Query 282774 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 282833 | ||||| || || ||||| || ||||| |||||||| || || ||| |||| |||| Sbjct 5317 ACGATGGGGTCGTACGATTCCCCTGATCGTTCGCAATGATCTCCACTCGGTCATTCTGCC 5376 Query 282834 ATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | || || ||||| | | || || || | ||||||||||| Sbjct 5377 ACACGCCAACACACGAATACGTCGTCCCCAGATCAATACCAA 5418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739450186688814