Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq238 116 4e-21 SEQ15627 96.9 3e-15 seq321 95.1 1e-14 >seq238 Length=29854 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||||||| || | || ||||| || |||||| Sbjct 20742 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCA 20801 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||| ||||| || ||||| |||||||| ||||| |||||| || || Sbjct 20802 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTA 20861 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | | ||| | || || || || | ||| | |||||||||||||||||| Sbjct 20862 ACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTGCCGGTCAATGTC 20921 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 20922 TTCACAAAAATCTGCAT 20938 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| || |||| |||| ||| ||||| || || ||| Sbjct 21198 GTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 21257 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || ||||| || || || |||||||||||||| ||| || || || Sbjct 21258 GCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTG 21317 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 21318 ACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTC 21377 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 21378 TTGACGAAGATCTGCAT 21394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||||||| || | || ||||| || || ||| Sbjct 21426 GTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCA 21485 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||| || || || ||||| ||||| |||||| || || Sbjct 21486 GCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTG 21545 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || || | || || || || | || | |||||||||||| | || Sbjct 21546 ACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTC 21605 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 21606 TTCACAAAGATCTGCAT 21622 >SEQ15627 Length=1670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| ||| | || | |||| || || || || || |||||||| ||||| Sbjct 1372 GCCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1431 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||||||| || || |||||| |||| ||||| | || || || | Sbjct 1432 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTG 1491 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| |||||| || || | | || | || ||| | || || || Sbjct 1492 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 1551 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | || || || || |||||||| Sbjct 1552 GTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq321 Length=26016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || || |||| || || || || || |||||||| || || Sbjct 9883 GCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACT 9824 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || || | || | || || || || || |||||| |||| || ||||| || || |||| Sbjct 9823 CAGAGTACGTCCA-TCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAG 9765 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | |||||||| ||||| ||| || || || | | || | | ||| | || || | Sbjct 9764 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCA 9705 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | |||||||||||||| || || || || || ||||| Sbjct 9704 CATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || |||||||| ||||||| || | || | || || || || || || Sbjct 9396 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCA-TCCTCTAGCTGCTTGCC 9338 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| || || ||||| || || || || ||||| ||||| ||||||||| || Sbjct 9337 AGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTT 9278 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | | ||| | || || || || | || | |||||||||||||| || Sbjct 9277 CACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGT 9218 Query 137394 TTTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 9217 CTTCACGAAGATCTGCAT 9200 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||||||| ||||| ||||| || || || || Sbjct 10080 GTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCG 10021 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||||||| ||||| || ||||| |||||||| ||||| ||| || || || Sbjct 10020 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9961 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| | || || || || | || | || || || || | || Sbjct 9960 ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTC 9901 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 9900 TTCACGAAAATCTGCAT 9884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || |||||||| || |||| || | || | || || || || || || Sbjct 9624 GTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCA-TCCTCTAGCTGCTTGCC 9566 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||| || ||||| || || ||||| |||||||| ||||| ||| || || || Sbjct 9565 AGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTT 9506 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | | ||| | || || || || | || | |||||||||||||| || Sbjct 9505 CACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGT 9446 Query 137394 TTTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 9445 CTTCACAAAGATCTGCAT 9428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488397198634800