Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq321 154 3e-32 seq238 136 8e-27 SEQ15627 91.5 3e-13 >seq321 Length=26016 Score = 154 bits (170), Expect = 3e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || ||||| ||||| || || ||||| || || || ||| ||| | | || Sbjct 9871 ACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCC 9812 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || ||||| || || ||||||||||| |||| |||||| || ||||| || |||||||| Sbjct 9811 ATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTT 9752 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| || || ||||| | || || || || ||||| || | Sbjct 9751 GTCCTGAATCTTCTGCTTC-ACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGA 9693 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| ||||||||||| ||||| |||||||| Sbjct 9692 TGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 140 bits (154), Expect = 6e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || ||| ||| | | || Sbjct 9642 CGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCA 9583 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || ||||| || || ||||||||||| |||| |||||| || ||||| || |||||||| Sbjct 9582 TCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTG 9523 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| || || ||||| | || || || || ||||| || || Sbjct 9522 TCCTGAATCTTCTGCTTC-ACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGAT 9464 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||||||||| ||||| |||||||| Sbjct 9463 GGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||||| || || || ||||| || || || || Sbjct 9426 CCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 9367 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || ||||| || || ||||| ||||| || | || || || || || Sbjct 9366 AGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 9307 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || ||||| ||| || || || || || | || || || || Sbjct 9306 ATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACG 9247 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 9246 TCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 9200 >seq238 Length=29854 Score = 136 bits (150), Expect = 8e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||||| || ||||| ||||| || || || ||| || | | ||| Sbjct 21179 ACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACC 21238 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| |||| || || || || || || ||||| || Sbjct 21239 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTT 21298 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| || || || |||| ||| ||| ||||| ||||| || | Sbjct 21299 GTCCTGAATCTTCTGCTTG-ACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGA 21357 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||||||||| || || |||||||| Sbjct 21358 TCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| | |||||| || || || ||||| || || || ||| Sbjct 20940 CCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTC 20999 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||| || ||||| || ||||| ||||| |||| || || || || || Sbjct 21000 AGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21059 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||| || || || || |||| || ||||| || Sbjct 21060 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACG 21119 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | ||||| || || |||||||| Sbjct 21120 TCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||| || || || ||||| || || || || || | | || Sbjct 20723 ACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCC 20782 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || || || ||||| || |||||||| Sbjct 20783 ATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTT 20842 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || ||||| || ||| || ||||| || || | || || || || |||| ||| | Sbjct 20843 GTCCTGAATTTTCTGC-TTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGA 20901 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| ||||| ||||| |||||||| Sbjct 20902 TCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | |||||| || || || ||||| || || ||||| Sbjct 21396 CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21455 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| || | || ||||| || || Sbjct 21456 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 21515 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| || ||||| || ||| || || || || |||| ||| || || || Sbjct 21516 ATTCCTTCCTTGTCCTGAATTTTCTGC-TTGACGTTGTCGATCGAATCCGACGGCTCCAC 21574 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 21575 GTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 >SEQ15627 Length=1670 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || || || || | | ||| Sbjct 1384 ACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACC 1443 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||||||||| || | |||| || || | ||||||||||| Sbjct 1444 GTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTT 1503 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || ||||| || ||| || || || || |||| || || || || || | || | Sbjct 1504 GTCCTGAATTTTCTGC-TTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 1562 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | ||||| ||||| || ||||| Sbjct 1563 TTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981524797529221