Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1885 100 2e-16 seq238 89.7 3e-13 seq321 86.0 4e-12 >seq1885 Length=10629 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||| || |||| | ||||| ||||| |||||||| || | | | ||| Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CGTTGTC 6125 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | ||||| | |||||||| | |||||| || || || || | || || ||||| Sbjct 6124 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 6065 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 6064 GATCTGCAT 6056 >seq238 Length=29854 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||| || || |||||||||||| Sbjct 21396 CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21455 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || || || || || || | |||||||||||| | || Sbjct 21456 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 21515 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||||||| || || | ||| | | || | ||||| Sbjct 21516 ATTCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAATCCGACGGCTCCAC 21574 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || | || || |||||||||||||| Sbjct 21575 GTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 >seq321 Length=26016 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||||||| | |||||| | || || | || Sbjct 10086 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGC 10027 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| ||||||||| || | || | ||||| ||||| ||| ||| Sbjct 10026 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC 9967 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| |||| ||| | | |||| | || ||||| | || || |||||||| || Sbjct 9966 TGCTTC-ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGT 9908 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || || |||||||| Sbjct 9907 AAGAGTCTTCACGAAAATCTGCAT 9884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328607697842880