Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2671 167 2e-36 seq321 118 1e-21 seq238 118 1e-21 SEQ15627 102 8e-17 >seq2671 Length=8519 Score = 167 bits (184), Expect = 2e-36 Identities = 573/880 (65%), Gaps = 25/880 (3%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 147514 || ||| | |||||||| ||||| || ||| || || || | || |||||| || | Sbjct 5823 CAGGGCAACAGACGCCAAGTTGCACACCGCCACTTCATCTGGAGACG-TGTACTCCATCA 5765 Query 147515 TTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGAT 147574 ||| ||||| ||||||| | || |||| ||| ||||| || || || | Sbjct 5764 CCTCGCAGCACAAGTTGCTGGAGCGAATCGTGCCCAGATTCTGCTGGTTCGACTTGCGGT 5705 Query 147575 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT-- 147632 || |||||||||| | |||||| |||| | || || || | || | || | ||| Sbjct 5704 TGGCCGCGTCTTTGTAAAGCATGAACGGCACTCCTGTTTCAATCTGAGCGTCCAAGATGG 5645 Query 147633 -AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACC 147691 ||||| ||| | |||||| | | || || ||||| ||||||||| Sbjct 5644 CAAACCA---CAGTTGCTGCGCATTGATGGTTTTGCGTGCACGTCCCTCCTTTTCGTACT 5588 Query 147692 GCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCG 147751 | ||||| | | ||||||||||| || |||| ||| ||| || ||| | || | Sbjct 5587 GTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCGTAAAGACCCGGAGCTTCATTGG 5528 Query 147752 GACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCC 147811 | || | || |||| || | | || | || | ||| |||||||| || |||| Sbjct 5527 GGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCAGGGACCC 5468 Query 147812 ACAGCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCA 147868 | ||||| || | | ||||||||| ||||| || | | || | ||||| || Sbjct 5467 ATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACTCGTTGCCGTGGTTCTTGCG---CA 5411 Query 147869 AATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCT 147927 | || | | | | | | ||| |||||||| ||||| | || || || | || ||| Sbjct 5410 GGTCCAGGAACTCGA-ACACGTCTGCGTGCCACGGTTCCAAATACACAGCGAACGAGCCT 5352 Query 147928 TTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATG 147984 || || || |||||||||||| || | |||| || ||| ||| || ||||||| |||| Sbjct 5351 TTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACGCGCAGCATG 5292 Query 147985 GGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACT 148044 || | |||| | | | |||||||||| || | |||| | ||||| | Sbjct 5291 GGGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTAGCTCGGATG 5232 Query 148045 TCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA- 148103 | ||||| | | | ||| ||||| || | |||| || ||| ||||| | || | Sbjct 5231 TTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACT-GCTTGAG 5173 Query 148104 --TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACAC 148161 |||||| |||| || |||||| ||||| || | | | |||| || ||||| || Sbjct 5172 CGTGTCGT--AGATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACGACGAC 5115 Query 148162 ATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTT 148221 | |||||| | |||| || || || || ||||| | || ||||| || || || Sbjct 5114 AACTGCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGAACTTC 5055 Query 148222 TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGC 148281 || ||| | ||||||| | || | | ||||||| ||| ||||||||| Sbjct 5054 TGCGACATGAGCTCGTACGTCTGCAGCGCCGCCTGGATGTCGGTCTTGTGGATGCCCAGC 4995 Query 148282 GCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTT 148321 || |||||||||| ||| ||||| || || || | |||| Sbjct 4994 GCCACGCGCATGATCATCTGCTGCGGCCGCTCTACCACTT 4955 >seq321 Length=26016 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||||||| || || |||||| ||||| || |||| Sbjct 10077 GACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCG 10018 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| |||||||| || || ||| || || |||| Sbjct 10017 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACA 9958 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | |||| |||||| || || | || | |||||||| || ||||| || Sbjct 9957 TTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTC 9898 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 9897 ACGAAAATCTGCATG 9883 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | ||||||| || |||||||||||||| |||| ||||| | Sbjct 9870 CGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCA 9811 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | |||| || || ||||| || ||||| |||||||| || Sbjct 9810 TCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTG 9751 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || |||| | || | | || | ||||||||| || | ||| | Sbjct 9750 TCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATG 9691 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | || ||||||||| Sbjct 9690 GTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| ||||| ||| || ||||| || || | Sbjct 9393 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCG 9334 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || || ||||| || || ||||||||| |||| Sbjct 9333 AAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACG 9274 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| || | || || || |||| ||| || Sbjct 9273 TTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTC 9214 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 9213 ACGAAGATCTGCAT 9200 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||| || | | | ||||| || |||||||||||||| |||| || Sbjct 9649 ACGAAGGCGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 9590 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || || | | |||| || || ||||| || ||||| ||||| Sbjct 9589 ACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCC 9530 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || || |||| | || | | || | ||||||||| || | Sbjct 9529 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAA 9470 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || |||| || || | || ||||||||| Sbjct 9469 CGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9427 >seq238 Length=29854 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| ||||| ||| |||||||| ||||| | | Sbjct 20745 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCA 20804 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| |||||||| || || |||||| || || | Sbjct 20805 AAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTAACA 20864 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | || | ||| || || |||| || || Sbjct 20865 TTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTC 20924 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 20925 ACAAAAATCTGCATG 20939 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||||| || |||||||||||||| |||| || Sbjct 20945 ACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 21004 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || || || || || | |||| || ||||| || || || || ||||| Sbjct 21005 GCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCC 21064 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||||| || | | || | | || | ||| ||||| |||| Sbjct 21065 TTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAG 21124 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | |||||||| || ||||| || | ||||||||||||| Sbjct 21125 GGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| |||| ||| || || |||||||| || || | Sbjct 21201 GATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCG 21260 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||||||||| || ||| || || || | Sbjct 21261 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTGACG 21320 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||| || || |||| || || Sbjct 21321 TTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTG 21380 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 21381 ACGAAGATCTGCATG 21395 >SEQ15627 Length=1670 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| ||| || ||||||||||| || || | | Sbjct 1406 GACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCA 1465 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||| |||| || || | || ||||| || || |||||| || || | Sbjct 1466 AAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACG 1525 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | || || || || || || || Sbjct 1526 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTC 1585 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 1586 ACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476467984292040