Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 302 6e-76 seq2671 242 5e-58 seq7045 197 2e-44 seq333 145 1e-28 seq25 132 7e-25 seq11 91.5 2e-12 >seq1 Length=128069 Score = 302 bits (334), Expect = 6e-76 Identities = 415/571 (73%), Gaps = 23/571 (4%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||| | || || ||||| |||||||| || || |||||||||| | || Sbjct 110882 CGAGCCGTTTTTGGTGGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCCAGGAGCACGA 110941 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | ||| |||||||| || ||||||||||| ||||| ||||| ||||| ||| |||| | Sbjct 110942 CGTGTGGCAAATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACGGCCGAAGAGCTCGATC 111000 Query 1455835 TCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | || |||||| || | || |||||||||| ||||||| Sbjct 111001 TAGTGCACGACCTCAAGG---ACTGGGGCAACCTCACGGATAACGAGCGCCACTTCATCA 111057 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||| |||||||| ||| || |||||||| |||||||| ||||||| |||| Sbjct 111058 AGCACGTGCTCGCCTTCTTT-GCGGCCAGCGACGGCATCGTCAACGAGAACTTGGCAATG 111116 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||| | || || || || | |||||||| || | || || || |||||||||||| Sbjct 111117 AACTTCAGCAACGAAGTGCAGGTACCAGAGGCGCGGTGCTTCTATGGCTTCCAGATCGCC 111176 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || ||||||||| || || ||||| ||| |||||||| || Sbjct 111177 ATTGAGAACATCCACTCCGAGGTCTACTCGCTGCTTATTGACACGTACATCAAGGACGCG 111236 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || |||||||||||||| | || || || ||||| | || | || | ||| || || Sbjct 111237 GTGGAGAAGGACCACCTGCTGCGTGCTATTGACACCATCCCATGTGTCAAGAAGAAAGCA 111296 Query 1456132 GACTGGG-----CGATGAAGTG-GATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||||| ||||| ||| || | | | | ||||| | | | ||||| | Sbjct 111297 CACTGGGCTCTCCGATG--GTGCGACC--CTCGTGTGTCCTCG----TATCCGGAGCGTC 111348 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 | ||| ||| || || || || |||||||| ||||||||| |||||| ||||||| | Sbjct 111349 TGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCT 111408 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||| |||||||| ||||| Sbjct 111409 GGCTCAAGAAGCGCGGTCTCATGCCGGGTCT 111439 Score = 181 bits (200), Expect = 2e-39 Identities = 243/327 (74%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-ACCGAC 1456510 ||||| ||||||||||| || | ||| ||| |||||| ||||||| | || | | | Sbjct 111478 TGCACACGGACTTTGCCTGCCTCATGTACTCGAAGCTCGTGAACAAGCTGCCGGAGAGCC 111537 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | | || | ||||| | ||| || || || | ||||||| | |||||||| |||| || Sbjct 111538 GCGTGCACG-AGATCGTGCGT-GATGCTGTGGTGATCGAGCATGAGTTTGTGCGCGATTC 111595 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||||||||||| ||||||||| |||||| | | ||||||||||||||||||| | || Sbjct 111596 GCTGCCGGTGGAGCTCATCGGTATGAACTCGGGC-CTCATGTGCCAGTACATTG-AGTTC 111653 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCG--GCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 || || |||||||| ||| |||| | | | | ||| || || || | ||| Sbjct 111654 GTGGCTGACCGCCTTCTCTACTCGCTGGGAGTTTCCAAGATCTACAACGCGAAG---AAC 111710 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || ||| |||||||| |||||||||| |||||||||||||||| |||||| || Sbjct 111711 CCTTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGT 111770 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGTC 1456773 || ||||||||| ||||||| || ||| Sbjct 111771 GTGGGCGAGTACTCCAAGGCTGGTGTC 111797 >seq2671 Length=8519 Score = 242 bits (268), Expect = 5e-58 Identities = 238/305 (78%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| |||||||||| |||| ||||| || ||||||||||| ||||| ||| Sbjct 5035 ACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCATGCCACGCCCACGCTGTTTAACGCC 5094 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||||||||| |||||| ||||||||||| ||| | | |||| | | ||| || ||| Sbjct 5095 GGCACGCCGCGTCCGCAGTTGTCGTCGTGCTTCCTGCTAGCCATGCAAGACGACTCCATC 5154 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||| ||||| ||||||||||||||||||||| |||||||||| ||| || |||||| Sbjct 5155 GAGGGAATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCAGGAGGCATC 5214 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 || | | ||| ||||| | || || | | |||| | |||||||||||| Sbjct 5215 GGCAT--CAGCATGCACAACATCCGAGCTACCAACAGCTACATTCGCGGCACCAACGGCT 5272 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 |||||||||| | | |||||||| ||||| || |||||||||||||||||||| |||| Sbjct 5273 CGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAACGACACGGCGCGCTACGTGGACC 5332 Query 260181 AGTGC 260185 || || Sbjct 5333 AGGGC 5337 >seq7045 Length=3816 Score = 197 bits (218), Expect = 2e-44 Identities = 369/534 (69%), Gaps = 6/534 (1%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| | |||| | || || || || ||||| |||||||| |||| |||| Sbjct 3304 TGGCAGATGTACAAGAAAG-CGGAAGCTTCGTTCTGGACAGCCGAGGAACTCGATCTCGT 3246 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGT 1455898 |||| | |||| | || | || | |||||||| |||||||| ||||| Sbjct 3245 GCACGACCTCAAAGATTGGGAGAAACTCACGGATAATGAGCGCCACTTCATCAAACACGT 3186 Query 1455899 CCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTA 1455958 ||||| ||||| ||| ||||| ||||| ||||| || || |||||| ||| | Sbjct 3185 GCTCGCATTTTT-CGCTGCCAGTGATGGGATCGTCAATGAAAATCTGGCCATGAACTTCA 3127 Query 1455959 TGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAA 1456018 || || || || |||| || || || | || ||||| |||||||||||||| || | Sbjct 3126 GCAACGAAGTGCAGGTGCCTGAAGCTCGATGCTTCTACGGTTTCCAGATCGCCATTGAGA 3067 Query 1456019 ACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGA 1456078 |||||||||| ||| |||||| || || || ||||| || ||||||| | || |||| Sbjct 3066 ACATCCACTCCGAAGTCTACTCACTGCTCATTGACACGTATATCAAGGATACTGTGGAGA 3007 Query 1456079 AGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGG 1456138 | || | || | || |||||||| || | || | || || || || |||||| Sbjct 3006 AAAACTATCTGCTGCGTGCCATCGAGACAATTCCCTGCGTTCAAAAGAAAGCGAACTGGG 2947 Query 1456139 CGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC 1456198 | |||| ||| | || | | | ||| | || | ||||| | | | ||||| Sbjct 2946 CATTGAAATGGTGCGAC-CCGCGTGTGTCGTC-CTACCCGGAGCGATTGCTGGCGTTTGC 2889 Query 1456199 CGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCG 1456257 | || || || ||||| || ||||| |||||| ||| || |||||||||||||| Sbjct 2888 TTCAGTGGAAGGTATCTTCTTTTCGGGGTCGTTCTGCAGCATTTTCTGGCTCAAGAAGCG 2829 Query 1456258 CGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||||||||| |||| || |||| || || | |||||||| ||||||| Sbjct 2828 AGGCCTCATGCCTGGTC-TCAGCTTCTCGAATGAGATGATCAGTCGTGACGAAG 2776 Score = 132 bits (146), Expect = 7e-25 Identities = 234/331 (71%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GA 1456505 |||| ||||| ||||| ||||| || | ||| ||| | |||||||| | | || Sbjct 2777 AGGTATGCACACAGACTTCGCCTGCCTCATGTACTCGAAATTGGTCAACAAACTACCAGA 2718 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | |||| || | |||||||| ||| || || | ||| || | ||||| ||| ||| Sbjct 2717 AAGTCGTGTACACG-AGATCATCCGCGATGCGGTGGTGATTGAACACGAGTTCGTCTGCG 2659 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | || || || |||| | | |||||||||||| | | | || |||||||||||||||| | Sbjct 2658 AATCTCTTCCTGTGGAGTTGATCGGCATGAACTCGA-CTCTAATGTGCCAGTACATTG-A 2601 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 |||||||| |||||| |||| |||| || || | ||| ||| ||| | Sbjct 2600 GTTTGTCGCTGACCGCTTGCTGTACTCGCT-GGGTGTGTCCAAGATATAC--AACGTCAA 2544 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 ||||||||| |||||||| ||||||| | |||| ||||||||||| || || Sbjct 2543 GAACCCGTTCGACTGGATGGATATGATCTCATTGCAGGGAAAGACCAACTTCTTTGAAAA 2484 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTC 1456773 || || || |||||| ||||||| || ||| Sbjct 2483 GCGTGTGGGGGAGTACTCCAAGGCTGGTGTC 2453 >seq333 Length=25706 Score = 145 bits (160), Expect = 1e-28 Identities = 180/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| ||||||||||| || ||||||||||| || || || Sbjct 25322 TCGTACTCTACCTACATCTACAAGGTCCTGCGTCAGGTGCACCCGGAGAC-----GGGCA 25376 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | ||||| |||||||||||||| |||||||||| |||| || ||| Sbjct 25377 TCAGCAAGCGCGGC-ATGTCTATCATGAACTCGTTCATCAACGACATCTTCGAGCGTATC 25435 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||||||||| || |||||| ||||||| |||| | | |||| ||| Sbjct 25436 GCCTCCGAGGCCGGTAAGCTCTCGCGCTACAACAAGAAGTCCACGTTGTCCTCGCGTGAG 25495 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || |||||||| || | | ||| |||||||||| ||||||||| || || Sbjct 25496 ATCCAGACGGCTGTGCGCCTCATGCTCCCCGGTGAACTGGCCAAGCACGCCGTGTCAGAA 25555 Query 725136 GGCAC 725140 ||||| Sbjct 25556 GGCAC 25560 >seq25 Length=66566 Score = 132 bits (146), Expect = 7e-25 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||| | |||||||||||| || || || Sbjct 48980 TCGTACTCGACCTACATCTACAAGGTGTTGCGCCAGGTGCACCCCGAGAC-----GGGCA 48926 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | ||||| |||||||||||||| |||||||||| |||| || ||| Sbjct 48925 TCAGCAAGCGCGGC-ATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGCGTATC 48867 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| || |||||| ||||||| |||| | |||||||| Sbjct 48866 GCTTCGGAGGCCGGCAAACTCTCGCGCTACAACAAGAAGTCCACGCTGTCTTCGCGCGAG 48807 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || |||||||| || | | || || ||||||| ||||||||| || || Sbjct 48806 ATCCAGACGGCTGTGCGCCTCATGCTCCCGGGTGAGCTGGCCAAGCACGCCGTGTCGGAA 48747 Query 725136 GGCAC 725140 ||||| Sbjct 48746 GGCAC 48742 >seq11 Length=92049 Score = 91.5 bits (100), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 2133440 GCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCG 2133499 ||||||||| || | | || ||||||||| ||||||| |||||| || | ||| Sbjct 9142 GCGCGAGGGACTGGTCAAGACGCCCATGCGCATGGCCAAAGCCATGTTGTACAACACCAA 9201 Query 2133500 CGGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGA 2133559 ||| || || || ||| || |||| | || | || |||| || |||| || Sbjct 9202 GGGCTATGGCCAGAGCCTCGCAGACGTCCTCAATGAGGCAGTCTTCGAAGAGGACCACGA 9261 Query 2133560 CGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCC 2133619 ||||||||| | || || || || || | | ||||||||||||||||||| || |||| Sbjct 9262 CGAGATGGTCATTGTACGGGACATCGATCTGTACTCCATGTGCGAGCACCACATGGTGCC 9321 Query 2133620 CTTTATCGGCAAGGCCCACGTGGGCTAC 2133647 || | ||||| | ||| | |||||| Sbjct 9322 GTTCACGGGCAAAGTGCACATCGGCTAC 9349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175492594266318