Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq238 159 3e-34 SEQ15627 150 2e-31 seq321 136 4e-27 seq2671 120 3e-22 seq1885 116 4e-21 >seq238 Length=29854 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || || ||||| |||||||||||||| | | ||| || Sbjct 20949 AGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGA 21008 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || || || ||||| || || || | |||||||| || || || |||||||| Sbjct 21009 CCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCC 21068 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||||| ||||| ||| | | ||| |||| |||||||||||| ||| Sbjct 21069 TTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTA 21128 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || | ||| || |||||||| ||||| Sbjct 21129 ATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 20709 TTTCCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCG 20768 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | || | || |||||||| || || ||||| || | ||||||||| || || Sbjct 20769 CTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGA 20828 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || |||||||| || || || ||| | || ||| |||| ||| Sbjct 20829 GGGATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCC 20888 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || || ||||| || || || || ||||| ||||| Sbjct 20889 ACGTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| | |||||||||||| || ||||||||||| | Sbjct 21168 CCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTC 21227 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| |||||||| ||||| || || || | |||||||| || || || Sbjct 21228 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21287 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || || ||||| ||| | | || || | || || Sbjct 21288 ATGCCTTCTTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACA 21347 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || ||||| || || || ||||| || ||||| Sbjct 21348 TCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || |||||||| |||| | || | Sbjct 21405 AGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGG 21464 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | |||||||||||| || || || ||||| Sbjct 21465 CCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCC 21524 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || ||||| ||| | | || |||| ||||||||||| || Sbjct 21525 TTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTG 21584 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | || || || || || ||||| || Sbjct 21585 ATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 >SEQ15627 Length=1670 Score = 150 bits (166), Expect = 2e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| |||||||||||||||| | |||| || Sbjct 1382 AGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGA 1441 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| || | |||| | || || || | || ||||| Sbjct 1442 CCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCC 1501 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || ||||| ||| | | ||| |||| ||||||||||| || Sbjct 1502 TTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 1561 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | || || || ||||||||||| || Sbjct 1562 ATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq321 Length=26016 Score = 136 bits (150), Expect = 4e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| | ||| || ||||| || ||||||||||||| | || | Sbjct 9417 AGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGT 9358 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || || | |||||||| || || || || ||||| Sbjct 9357 CCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCC 9298 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||||||||| || || ||| | | ||| |||| ||||||||||| || Sbjct 9297 TTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTG 9238 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 ||||| || ||||| ||||| || ||||| || ||||| |||| Sbjct 9237 ATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTTGT 9195 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| | ||| || || || ||||| |||||||||||||| | Sbjct 9882 CCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTC 9823 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| ||||| ||||| || | || || || || || || Sbjct 9822 AGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGG 9763 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || || || || ||| | || ||| |||| ||||| Sbjct 9762 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACA 9703 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || ||||| || || || || || || ||||| Sbjct 9702 TCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| |||||||||||||| | | || | Sbjct 9645 AGGCGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGT 9586 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| || | || || || || || || |||||||| Sbjct 9585 CCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCC 9526 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | || ||| |||| ||||| || | || Sbjct 9525 TTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTG 9466 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || || || || ||||| Sbjct 9465 ATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 >seq2671 Length=8519 Score = 120 bits (132), Expect = 3e-22 Identities = 286/425 (67%), Gaps = 13/425 (3%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| ||||| | || || || Sbjct 4972 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACCGACATCCAGGCGGCGCTG 5031 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | |||||| | | ||||| ||| || ||||| || ||||||| ||||| | Sbjct 5032 CAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCATGCCACGCCCACGCTGTTTAAC 5091 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || ||||| ||||| || ||||| |||||| || ||| Sbjct 5092 GCCGGCAC-GCCGCGTCCGCAGTTGTCGTCGTGCTTCCTGCTAGCCATGCAAGACGACTC 5150 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| || || ||| ||||||| | ||||| || ||||| | | || || Sbjct 5151 CATCGAGGGAATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCAGGAGG 5210 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACG 7861 || || | | | | || || | || || | | ||| || ||| | |||||||| Sbjct 5211 CATCGGCATCAGCATGCACAACATCCGAGCTACCAACAGCTACATTCGCG-GCACCAACG 5269 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | ||| ||| | |||||| ||||||| ||||| || ||| ||| | || | Sbjct 5270 GCTCGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAACGACACGGCGCGCTACGTGG 5329 Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGC---CGCTGCCATCTATTTGGAGCCGTGGCACG 7975 ||||||| ||| || ||||||||| | ||||| | |||||||| |||||||||| Sbjct 5330 ACCAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTG---TGTATTTGGAACCGTGGCACG 5386 Query 7976 CGGAC 7980 | ||| Sbjct 5387 CAGAC 5391 >seq1885 Length=10629 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| |||||||| || || || ||||| || ||||| || Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 6125 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6067 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 6066 AAGATCTGCAT 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505246534098280