Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value SEQ18774 105 1e-17 seq1177 102 1e-16 >SEQ18774 Length=1356 Score = 105 bits (116), Expect = 1e-17 Identities = 253/380 (67%), Gaps = 2/380 (1%) Strand=Plus/Minus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || || ||||||||||| || ||| |||| ||||| ||| | ||| Sbjct 1319 TCTACCAAGCCTCGACAAGTGAGTTGTACGGCAAGGTGCAAGCCACACCGCAGGATGAAG 1260 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 || ||||| |||| || || || || || || || |||| | || | ||||| | Sbjct 1259 ACACTCCTTTTCACCCTCGTTCGCCTTACGGGGTTGCGAAACAATTTGCCTTTTGGAGCG 1200 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGT-AGTGGTATTCTATTCAACCAT 161491 | |||| || | || |||||| ||| ||| |||| | || || || |||||||| Sbjct 1199 TGGTGAACCACCGTGAAGCTTATGGCATGTACG-CAGTCAACGGGATCCTGTTCAACCAC 1141 Query 161492 GAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGT 161551 ||| |||||||| || ||| || || || || ||||| ||| | | | ||| Sbjct 1140 GAGAGTCCACGACGCGGACCGACCTTTGTCACGCGAAAGATCACTCGAGCTGTGGTGCGT 1081 Query 161552 ATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGG 161611 ||| || | || | || | || || | |||| || | | | | || || ||| Sbjct 1080 ATTCGTGCTGGGATCGAGAAATGCCTCTTTGTAGGAAACTTGGATGCGAAGCGCGACTGG 1021 Query 161612 GGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGAT 161671 |||||||| ||||| ||||| |||||| ||| ||||||| || || || || Sbjct 1020 GGTCATGCACGTGACTACGTGGAATGCATGTGGCGAATGCTACAACACGATACACCGGAA 961 Query 161672 GACTATGTGATTGCCACAGG 161691 || | ||| |||| || || Sbjct 960 GATTTCGTGGTTGCGACTGG 941 >seq1177 Length=13985 Score = 102 bits (112), Expect = 1e-16 Identities = 252/380 (66%), Gaps = 2/380 (1%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || || || |||||||| || || |||| ||||| ||| | ||| Sbjct 13228 TCTACCAAGCTTCGACAAGCGAGTTGTACGGCAAAGTGCAAGCCACACCGCAGGATGAAG 13287 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 || |||||| |||| || || || || || || || |||| | || | ||||| | Sbjct 13288 ACACTCCTTTCCACCCTCGTTCGCCTTACGGGGTTGCGAAACAATTTGCCTTTTGGAGCG 13347 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGT-AGTGGTATTCTATTCAACCAT 161491 | |||| || | || |||||| ||| |||| ||| | || || || |||||||| Sbjct 13348 TGGTGAACCACCGTGAAGCTTATGGCATGTACGC-AGTCAACGGGATCCTGTTCAACCAC 13406 Query 161492 GAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGT 161551 ||| |||||||| || ||| || || || || ||||| ||| | | | ||| Sbjct 13407 GAGAGTCCACGACGCGGACCGACCTTTGTCACGCGAAAGATCACTCGTGCTGTGGTGCGT 13466 Query 161552 ATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGG 161611 ||| || | || | || | || || | |||| || | | | | || || ||| Sbjct 13467 ATTCGTGCTGGGATCGAGAAATGCCTCTTTGTAGGAAACTTGGATGCGAAGCGCGACTGG 13526 Query 161612 GGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGAT 161671 |||||||| ||||| ||||| |||||| ||| ||||||| || || || || Sbjct 13527 GGTCATGCACGTGACTACGTGGAATGCATGTGGCGAATGCTACAACACGATACACCGGAA 13586 Query 161672 GACTATGTGATTGCCACAGG 161691 || | ||| |||| || || Sbjct 13587 GATTTCGTGGTTGCGACTGG 13606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729710265279320