Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7045 185 1e-41 seq1 105 9e-18 >seq7045 Length=3816 Score = 185 bits (204), Expect = 1e-41 Identities = 419/625 (67%), Gaps = 9/625 (1%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||||||||| || | || || || | ||| || | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | |||| |||||||| || || ||||| |||||||| || || || ||| || || || Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAAT-GCTGCAGAACGACCCC 2864 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||||||||| ||||| |||| ||||| || | | || ||| ||| | || Sbjct 2865 GAAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGACGACACA 2924 Query 39788 ---TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | ||| ||| |||||| | |||||||| | || || || ||||| || Sbjct 2925 CGCGGGTCGCACCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCG 2984 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || ||| | ||||| | ||| || || |||| || | ||| || || || | ||| Sbjct 2985 ATGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAGT 3044 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || | ||| || |||||||| ||||| || ||||| || ||||| || |||| ||| Sbjct 3045 GAGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCT 3104 Query 39965 TCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| | || || || || || || | |||| ||||||||| || || |||| Sbjct 3105 TCAGGCACCTGCACTTCGTTGCTGAAGTTCAT--GGCCAGATTTTCATTGACGATCCCAT 3162 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || || |||||||| | || ||||| || || | |||| || | || Sbjct 3163 CACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTT 3222 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | | ||| || |||| || | | ||| | ||| || |||||||| ||||| || | Sbjct 3223 TCTCCCAATCTTTGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTT 3282 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | || || |||||||| | ||| | ||| | | ||| || || || | || |||| || Sbjct 3283 CCGCTTTCTTGTACATCTGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGAT 3342 Query 40203 TTGGATTTTTTGCAAGGATGGGTTC 40227 | ||||| | | || | |||||| Sbjct 3343 TGGGATTCTCCACGAGAAAGGGTTC 3367 >seq1 Length=128069 Score = 105 bits (116), Expect = 9e-18 Identities = 367/563 (65%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||| ||||| || | |||||| || | ||||| | ||||| || | Sbjct 111504 ACATGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGA 111445 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCA 39727 | |||| || ||||| ||||| ||||| |||||||| || |||| |||| ||| | || Sbjct 111444 AACTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 111386 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA-TC 39786 || |||||||||||||| || || || || || | || | ||| | | || | | | Sbjct 111385 GAGAAGAAGATGCCTTCCACCGCCGCGAAGGCGAGCAGACGCTC-CGGATACGAGGACAC 111327 Query 39787 ATTA-TGTATCCACTTC--TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | | || | | || | ||||| | ||||||||||| ||||| || || || || Sbjct 111326 ACGAGGGTCGCACCATCGGAGAGCCCAGTGTGCTTTCTTCTTGACACATGGGATGGTGTC 111267 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 |||||| | || | | || || | || || | || || || || | ||| Sbjct 111266 AATAGCACGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCAATAAGCAG 111207 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || || |||||||| ||||| || ||||| || || || || || | || Sbjct 111206 CGAGTAGACCTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCACCGCGC 111147 Query 39964 TTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || | | || || || || || || || ||||| || || || || || || Sbjct 111146 CTCTGGTACCTGCACTTCGTTGCTGAAGTTCATT--GCCAAGTTCTCGTTGACGATGCCG 111089 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT 40081 || || || ||||| || || | || || || || || | || | || | Sbjct 111088 TCGCTGGCCGCAAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTATCCGTGAGG 111029 Query 40082 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 || |||||| |||| || | || ||| | ||||| || ||||| || || ||| Sbjct 111028 TTGCCCCAGTCCTTGAGGTCGTGCACTAGATCGAGCTCTTCGGCCGTCCAGAAGGATGCC 110969 Query 40142 TCTGCCTTTTTGTACATGTTCCA 40164 || ||||| |||||||| | ||| Sbjct 110968 TCGGCCTTCTTGTACATTTGCCA 110946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686702392491960