Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq465 93.3 3e-14 >seq465 Length=22214 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 ||||||||||| ||||| | | |||||| |||| || ||||| |||| |||||| Sbjct 6738 GCGTGGAACCCTGCGGACCTGAACGAGATGGCGCTGCCTCCGTGTCACATGTTCTGTCAG 6679 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || ||||| |||| || |||| || || |||| || | || | || ||||| Sbjct 6678 TTCTACGTGGCTGATGGGGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGATATGGGC 6619 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 || || || ||||| ||||| || || || ||| |||| || || |||| || || Sbjct 6618 CTCGGTGTTCCGTTCAACATTGCCAGCTACGCTTTGCTGACACGACTGGTTGCCCAAGTA 6559 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCA--CACGTTA--GGAGATGGACATATTTACAT 41257 | |||||||||| || ||||| || |||| || |||| |||| | ||| | Sbjct 6558 GCAGGACTAAAACCTGGCGA----GTTCATCCATGTTATCGGCGATGCACATGTGTACTT 6503 Query 41258 TAATCACATAGAGCCGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACGC 41316 || ||| | || ||| | ||||| ||||| || || | || | || || || |||| Sbjct 6502 GAACCACGTGGAACCGCT-TCAGAAGCAACTAACGCGTACGCCACGGCCGTTCCCGACGC 6444 Query 41317 T 41317 | Sbjct 6443 T 6443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397339555204195