Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2671 91.5 1e-13 SEQ15627 89.7 4e-13 >seq2671 Length=8519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 293/454 (65%), Gaps = 3/454 (1%) Strand=Plus/Minus Query 131741 AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT- 131799 || || || | ||| || ||||| |||||||||||||| || | | ||||||||| || Sbjct 5402 AACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACAGCGAACGAGCCTTTGCGTTTG 5343 Query 131800 --ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857 ||||| || | || | || || ||| |||| ||||||||| |||||| | Sbjct 5342 CCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACGCGCAGCATGGGGATGATG 5283 Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 ||||||| || ||||||| |||||||||| | |||| ||| ||||| | | Sbjct 5282 CCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTAGCTCGGATGTTGTGCATG 5223 Query 131918 TTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977 ||| || || ||||| | | || ||||| ||||| | | || |||| ||| Sbjct 5222 CTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAG 5163 Query 131978 ATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGA 132037 || || || | | ||| | ||| | | | ||||| || |||||||| | | Sbjct 5162 ATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACGACGACAACTGCGGACGC 5103 Query 132038 AATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCAC 132097 |||||||| ||||| ||||| |||| || || || | || | | |||| | Sbjct 5102 GGCGTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGAACTTCTGCGACATGAGC 5043 Query 132098 CGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATG 132157 |||| || | || | || ||| ||| | || ||| || || || |||||| Sbjct 5042 TCGTACGTCTGCAGCGCCGCCTGGATGTCGGTCTTGTGGATGCCCAGCGCCACGCGCATG 4983 Query 132158 TACATGTGTTGAATGCGCTCGGCCGTTTTGCCGT 132191 ||| || || ||||| || |||||||| Sbjct 4982 ATCATCTGCTGCGGCCGCTCTACCACTTTGCCGT 4949 >SEQ15627 Length=1670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || | ||| || || || ||||| ||||||||||||| | |||| |||||||| Sbjct 1391 ACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCG 1450 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||||||| |||| || || | | || || || || Sbjct 1451 AGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGA 1510 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || | || | | | || | | ||| | | || || || || || || | ||| Sbjct 1511 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTG 1570 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || |||||||| |||||||| Sbjct 1571 CCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424809904711368