Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7045 122 1e-22 seq1 102 1e-16 seq43 89.7 6e-13 seq2789 86.0 8e-12 >seq7045 Length=3816 Score = 122 bits (134), Expect = 1e-22 Identities = 357/534 (67%), Gaps = 26/534 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 122429 || ||||| || ||||| ||||||||||||||||| || | ||| | | | | ||||| Sbjct 2469 TACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGA-TCATATCCAT 2527 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGAC 122488 |||| || || ||||| |||| | || | ||| |||| | || || | | Sbjct 2528 CCAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAGTAC-AGCAAGC 2586 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 122547 | || | ||| |||||||||||| | |||| |||||||| ||||| | | | Sbjct 2587 GGTCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCGATCAACTCCA 2646 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 || || || | || ||| |||| | | |||||| | ||||| || | ||| || Sbjct 2647 CA-GGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCGGATGATCTCG 2705 Query 122608 TGGATAG---TTTC-GGTAGTGGGT----CTATTACGCAAAGT-CTTGAAGAGCTCCACG 122658 || | | |||| |||||| || | ||| || ||| | ||| | || | Sbjct 2706 TGTACACGACTTTCTGGTAGTTTGTTGACCAATTTCG---AGTACATGAGG-----CA-G 2756 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || || ||| | ||| || || || || | ||||| ||||||| ||||| Sbjct 2757 GCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCA 2816 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| |||| |||||| ||||| || ||||||||| Sbjct 2817 GGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCGAAAAGAAGATA 2876 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAA 122837 || ||||| | |||||||| | | || || | | |||| ||| || | || | Sbjct 2877 CCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGA-CGACACACGCGGGTCGCA 2935 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||||||| |||||| ||||| ||||| | || || || | || | |||||| Sbjct 2936 CCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGATGGC 2989 >seq1 Length=128069 Score = 102 bits (112), Expect = 1e-16 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 111781 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 111722 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||||||||| | || | || |||| | || ||| || || Sbjct 111721 CAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAGTA-GAGAAGGCG 111663 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||||||||||| | |||| | ||||||||||||||||| | Sbjct 111662 GTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCGATGAGCTCCAC 111603 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || | || | ||| | | ||| ||| | || || || |||||| |||| Sbjct 111602 CGGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGCACGATCTCGTG 111543 Query 122610 GATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | ||| || || | | || | | | ||| || |||||| | Sbjct 111542 CACGCGGCTCTCCGGCAGCTTGTTCACGA-GCTTCGAGTACATGAGG--CA-GGCAAAGT 111487 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 || ||| | ||||| || ||| ||| || || || ||||| | ||||| ||||||| Sbjct 111486 CCGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACTGAGACCCGGCATGA 111427 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | |||||| || || ||||||||||| || |||| Sbjct 111426 GACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCA 111367 Query 122786 C 122786 | Sbjct 111366 C 111366 >seq43 Length=56266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 182661 AGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCG 182720 || || ||||| | || || || ||||| | |||||||||||| ||||| |||||| Sbjct 26137 AGTTGCGCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAGAGGGAAAACACCG 26196 Query 182721 TAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCC 182780 || ||||| || ||||| || | || || || || || || | ||| || ||||| || Sbjct 26197 TACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTTGGCGGAATCGCCT 26256 Query 182781 TCCGTGACAATGAGAGTACACT 182802 ||||| | |||||| | ||||| Sbjct 26257 TCCGTCAAAATGAGTGCACACT 26278 >seq2789 Length=8247 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1776 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1717 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 1716 CCGGTAGGAGCT 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627843284234400