Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2671 172 7e-38 seq1 159 4e-34 seq43 100 4e-16 seq7045 98.7 1e-15 >seq2671 Length=8519 Score = 172 bits (190), Expect = 7e-38 Identities = 637/982 (65%), Gaps = 27/982 (3%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || |||||||| || || || | || | ||||| || | ||| || ||||| ||||| Sbjct 5996 TCAGCGAGACCCTGTACGCCAATCCCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGCT 5937 Query 118587 GTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| |||| || || | || || || ||| | || ||||| ||| || || || Sbjct 5936 -TCTACCACCGGGTAGTAGTTGACGTCAATCACCTTGTTCAGATTGCGGGTCACCACTTT 5878 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705 || | || | || || | || | || || | ||||| || |||| || Sbjct 5877 GGTCACCTCGTACAGTTTCTGATAGTTGAACACGCCA---TCTTCCACGA---ACTTGGG 5824 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||||| | ||||||| || ||||| | ||||| | |||||||| || | Sbjct 5823 CAGGGCAACAGACGCCAAGTTGCACACCGCCACTTCATCTGGAGACGTGTACTCCATCAC 5764 Query 118766 TTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || ||||||||| || | ||| ||||||| |||| || || ||||| | Sbjct 5763 CTCGCAGCACAAGTTGCTGGAGCG--AATCGTGCCCAGATTCTGCTGGTTCGACTTGCGG 5706 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || ||| || |||||||||||| | ||| || || || | || | | | || Sbjct 5705 TTGGCCGCGTCTTTGTAAAGCATGAACGGCACTCCTGTTTCAATCTGAGCGTCCAAGATG 5646 Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTA 118939 || ||| | | || || ||| | ||| ||| || || ||||| | ||||| Sbjct 5645 GCAAACCACAGTT--GCTGC--GCATTGATGGTTTTGCGTGCACGTCCCTCCTTTTCGTA 5590 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999 || | |||||| | ||||||||| || ||| | ||| | || || || || | || Sbjct 5589 CTGTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCGTAAAGACCCGGAGCTTCATT 5530 Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059 |||||||| | | ||| | ||| |||| |||| ||||||||| || || |||| Sbjct 5529 GGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCAGGGAC 5470 Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCA 119118 ||| ||||| |||| | || || ||| || || | | || || || |||| Sbjct 5469 CCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACT-CGTTGCCGTGGTTCTTGCGCA 5411 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 |||| || || | | || |||||||||||||||| ||||| |||| || || | Sbjct 5410 GGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACAGCGAACGAGCCTT 5351 Query 119179 TACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 | || | || |||||| || || | ||| ||| |||| ||||| || ||||| | Sbjct 5350 TGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACGCGCAGCATGG 5291 Query 119236 GAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACAT 119295 | ||||| || | ||| ||| || || || ||||| || | |||| || | Sbjct 5290 GGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTAGCTCGGATGT 5231 Query 119296 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 119355 ||| ||| || || || || ||||||||||| ||||| |||||||| | |||| Sbjct 5230 TGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 5171 Query 119356 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 119415 || ||||||| || ||||| ||||| | | | || | |||||||| ||||| | Sbjct 5170 TGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACGACGACAACT 5111 Query 119416 GAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGG 119474 | || | || || || ||||| || || || || || || || |||| | || | || Sbjct 5110 GCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGA-ACTTCTGC 5052 Query 119475 GACATCTTGTCGTAGGTCTCCA 119496 ||||| ||||| |||| || Sbjct 5051 GACATGAGCTCGTACGTCTGCA 5030 >seq1 Length=128069 Score = 159 bits (176), Expect = 4e-34 Identities = 305/444 (69%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 111781 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 111722 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| | ||| | || | ||||| | | | ||| || || Sbjct 111721 CAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAGTAGAGAAGGCGG 111662 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | ||||||||||||||||| | Sbjct 111661 TCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCGATGAGCTCCACC 111602 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 || |||| || | ||| | | ||| || ||||||| || |||||||| |||| Sbjct 111601 GGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGCACGATCTCGTGC 111542 Query 129968 ATG-GTCTCCGTGCCAGGTCTATT---GCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | | | ||| | ||| | | || | || | | | ||| || |||||| || Sbjct 111541 ACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG--CA-GGCAAAGTC 111486 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 | ||| | |||||||||||| ||||| || |||||||| | ||||| |||||||| Sbjct 111485 CGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACTGAGACCCGGCATGAG 111426 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || || ||||| ||||||||||| || ||||| Sbjct 111425 ACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCAC 111366 Query 130144 ACACGCGAACGCAAAGAGACGCTC 130167 |||||| || | |||||||| Sbjct 111365 CGCCGCGAAGGCGAGCAGACGCTC 111342 >seq43 Length=56266 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 179919 GAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACC 179978 |||||||||||||| ||||| || ||||| | || || || |||||||| ||||| Sbjct 26136 GAGTTGCGCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAGAGGGAAAACACC 26195 Query 179979 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 180038 ||| ||||| || ||||| || | || || || ||||| || | || |||||||| || Sbjct 26196 GTACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTTGGCGGAATCGCC 26255 Query 180039 CTCCGTCACGATGAGCGTACACT 180061 ||||||| ||||| | ||||| Sbjct 26256 TTCCGTCAAAATGAGTGCACACT 26278 >seq7045 Length=3816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/431 (66%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| || ||||| || |||||||| ||||| || | ||| ||| | ||||| Sbjct 2469 TACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGATCATATCCATC 2528 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || | ||| || | | | || | || Sbjct 2529 CAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAGTACAGCAAGCGG 2588 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| |||||||| ||||| | | ||| Sbjct 2589 TCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCGATCAACTCCACA 2648 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || | || ||| |||| | | ||||| |||| || || || | ||| |||| Sbjct 2649 -GGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCGGATGATCTCGTG 2707 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCC 130024 | | || || || | | ||| ||| || | | | | || ||| || || Sbjct 2708 TACACGACTTTCTGGTAGTT-TGTTGACCAATTTCGAGTACATGAGGCA-GGCGAAGTCT 2765 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| | ||| |||||||| ||| | ||||||||||||| ||||| |||||||| Sbjct 2766 GTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCAGGCATGAGG 2825 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | ||||||||| || || || || || |||||||| || ||||| Sbjct 2826 CCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCGAAAAGAAGATACCTTCCACT 2885 Query 130145 CACGCGAACGC 130155 | || ||||| Sbjct 2886 GAAGCAAACGC 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618249367952840