Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7045 150 2e-31 seq2671 141 1e-28 seq1 116 4e-21 >seq7045 Length=3816 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| |||||| |||||| || ||||| || | || | |||||| | Sbjct 3040 CTCATTGACACGTATATCAAGGATACTGTGGAGAAAAACTATCTGCTGCGTGCCATCGAG 2981 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 94790 ||| |||| || |||||||||||||| | ||||| |||| |||| || | || Sbjct 2980 ACAATTCCCTGCGTTCAAAAGAAAGCGAACTGGGCATTGAAATGGTGCGACCCGCGTGTG 2921 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| ||| | |||||| | | || ||||| | || || ||||||||||| || || Sbjct 2920 TCGT-CCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGG 2862 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| |||| ||||||||||||||||| |||||||| |||||| ||||||| Sbjct 2861 GTCGTTCTGCAGCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTCAGCTTCTC 2802 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||| | ||| ||||||||| || | ||| ||| || || Sbjct 2801 GAATGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGC 2757 >seq2671 Length=8519 Score = 141 bits (156), Expect = 1e-28 Identities = 414/629 (66%), Gaps = 9/629 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||||||||| | || || || | ||||| | | | Sbjct 4969 CCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACCGACATCCAGGCGGCG 5028 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || |||| ||||| ||||| || | || | |||| || || || || || || || Sbjct 5029 CTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCATGCCACGCCCACGCTGTT 5087 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || || |||| |||||||| | |||| | || || Sbjct 5088 TAACGCCGGCACGCCGCGTCCGCAGTTGTCGTCGTGCTTCCTGCTAGCCATGCAAGACGA 5147 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 5148 CTCCATCGAGGGAATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCAGG 5207 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || || || || ||| || | | |||| | || | || ||||| || || | Sbjct 5208 AGGCATCGGCATCAGCATGCACAACATCCGAGCTACCAACAGCTAC-ATTCGCGGCACCA 5266 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || || || || ||||| |||||||| |||| ||| |||||||| | Sbjct 5267 ACGGCTCGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAACGACACGGCGCGCTACG 5326 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || || || || |||| || ||| | || || ||||||| Sbjct 5327 TGGACCAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTGTGTATTTGGAACCGTGGCACG 5386 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || | | |||||||| || |||| ||||| || ||||| | || | Sbjct 5387 CAGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAGTTGCATCGAGCGC 5446 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| | |||| || || ||| | || ||||| ||||||||||| || |||| | || Sbjct 5447 GCGACTTGTTCTATGCGCTATGGGTCCCTGATCTGTTCATGAAGAGGGTGGAGGCCAATG 5506 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 |||| ||| | | || || || | | || || ||||| | ||| ||| | ||| || Sbjct 5507 GCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCGGGTCTTTACGAGTGCTG-GGGAGAC 5565 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGA 104844 ||||||||| | || ||| | ||||||| Sbjct 5566 GAGTTTGAAACGCTCTACGAACAGTACGA 5594 >seq1 Length=128069 Score = 116 bits (128), Expect = 4e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || |||| || ||| || || || ||||||||||| || ||||||||| | Sbjct 111342 GAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 111401 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||||||||||| ||||||||||| |||||| | ||||| |||||||| || Sbjct 111402 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| | ||| || ||||| Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGC 111493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583085537420360