Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq465 125 6e-24 seq440 84.2 2e-11 >seq465 Length=22214 Score = 125 bits (138), Expect = 6e-24 Identities = 263/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 ||||||||||||| | || ||| || || || || || | |||| ||||| || Sbjct 6485 AGCGGTTCCACGTGGTTCAAGTACACATGTGCATCGCCGATAACATGGATGAACTCGCCA 6544 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29993 |||| ||| || | || || || | || || |||| || | || ||||||||| |||| Sbjct 6545 GGTTTTAGTCCTGCTACTTGGGCAACCA-GT-CGTGTCAGCAAAGCGTAGCTGGCAATGT 6602 Query 29994 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC 30053 | || || || ||||| ||||| || |||| | |||||| | ||| || || | ||| | Sbjct 6603 TGAACGGAACACCGAGGCCCATATCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCCC 6662 Query 30054 CGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGT 30113 | || |||||| |||||||| | ||| |||||||| || ||||| | || || Sbjct 6663 CATCAGCCACGTAGAACTGACAGAACATGTGACACGGAGGCAGCGCCATCTCGTTCAGGT 6722 Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGA 30170 | |||||||| || | | || || |||||||| |||||| ||| | || Sbjct 6723 CCGCAGGGTTCCACGCCGATAAGACAATCCGCCTGTCACTTGGGTTCGTCCGCAGCTTGT 6782 Query 30171 GGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30229 || ||| || || || || ||||| ||| || | ||||||||| |||||| Sbjct 6783 GGATCAC----TTCAGCGAGTTGGTCCACGCCCTGTCCAGTGTAGTCTGCATGCATGTCT 6838 Query 30230 GTGTACTCTGCTCCGAAATGCCTCCA 30255 ||||||| || || || || | ||| Sbjct 6839 GTGTACTTGGCCCCAAAGTGGCGCCA 6864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 229/345 (66%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || || ||||| ||| ||| | ||||||||| |||||| ||||||| || || || Sbjct 6918 AGTTGGTCCACGCCCTGCCCAGTGTAGTCTGCATGCATGTCTGTGTACTTGGCCCCAAAG 6977 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||||||||| || || |||||||| |||||||| |||| | | || | || Sbjct 6978 TGGCGCCACTGGAATCCATAGACCGGTCCAAGGTCTCCGACTTCTCGGGACTGCAGTCCT 7037 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 | |||||| | || | || || || |||||||||| | | |||||| Sbjct 7038 CGACTGTCCAGGTACTCACGCGATCCATTTCCGTCCCAGATGTGAATATCCTTCTGCTGT 7097 Query 30368 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30427 ||| | | | | ||| || || | |||||||||||| |||||| | || | | Sbjct 7098 AGCGTGTGCGCGCTAGTGTCGCCGCTAATGAACCACAGCAGTTCCTCCGCCACTCCTCGC 7157 Query 30428 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGTACCTGGC 30483 || || || | ||||||||| || | || ||| |||||| | || | |||| Sbjct 7158 CAGAACACACGCTTGGTCGTCAGCAATGGGAACACGTTGTCCC-TCAGACTAAACCTCAT 7216 Query 30484 CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 30528 ||| | ||||| | ||||| || || ||||| | |||||| Sbjct 7217 CTGCGCTCCAAAAAGCGACAACGTGCCTGTTCCCGTGCGGTCTCC 7261 >seq440 Length=22882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/294 (66%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| | | | ||| Sbjct 21644 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGTCCCACGCGGTC 21703 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 ||| | || ||| | || |||| | | ||| ||||| || ||||| | |||||| Sbjct 21704 GCCGCGCTTGACGGGGAAATCCTCGCTCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 21763 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | || || || ||| || || || || ||||| || ||||| Sbjct 21764 TCGGTAGTCGGCGTCGATGACGCCAGCGCCGGTATCGATGAATTTCTTCAGAGCGAGGCC 21823 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 || | || ||||| | | ||||| ||| ||||| | | ||||||||||||| Sbjct 21824 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACGGCGATGACCAGGTCCGTCTT 21883 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTC 49327 || || || || | | ||||| ||| | || ||||||| ||||| Sbjct 21884 GACGAGACCCTTGCCACCCGCGGGGATGACGGCGTCGTAGGCGGCCGAGAGGTC 21937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406191361083588