Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq238 95.1 8e-15 seq321 84.2 1e-11 >seq238 Length=29854 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || || || |||||| || ||||| || || Sbjct 20712 CCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20771 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| || | |||||| ||||| || || Sbjct 20772 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 20831 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| || || || || ||| | |||| ||| |||||| Sbjct 20832 ATGCCTTCCTTGTCCTGAATTTTCTGCTT-AACATTGTCGATTGAGTCCGACGGCTCCAC 20890 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || ||||| || ||||| || || |||||||||||||||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || || || |||||| |||||||| || || || || || Sbjct 20949 AGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGA 21008 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| || || || || || | ||||| ||||| || || | || ||| Sbjct 21009 CCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCC 21068 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCACTTCCACGG 34666 |||||| |||||||| || | || | || | ||| || | ||||| || | || Sbjct 21069 TTGTCTTGAATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGT-TCCACGTCGAGGG 21126 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || |||||||| || | || || || |||||||||||| Sbjct 21127 TAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 >seq321 Length=26016 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| ||||| | ||| || | ||||| || || Sbjct 10086 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGC 10027 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | || |||||||| ||||| Sbjct 10026 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC 9967 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 || || | ||| | ||| ||| || |||| ||| || |||||||| || Sbjct 9966 TGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTA 9907 Query 34684 AACGTTTTCACAAAAATCTGCATG 34707 | || ||||| |||||||||||| Sbjct 9906 AGAGTCTTCACGAAAATCTGCATG 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314637391997087