Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq238 174 1e-38 SEQ15627 145 7e-30 seq321 141 8e-29 >seq238 Length=29854 Score = 174 bits (192), Expect = 1e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || || ||||||| || || ||||||||||| Sbjct 21167 CATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTC 21108 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| ||||||||||| |||||||| || || || || Sbjct 21107 GGACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCA 21048 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| ||| | || ||| || || | || ||||| Sbjct 21047 GCAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAA 20988 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||||||| | || ||||| ||||| |||| |||||||| Sbjct 20987 CATTCAGAAGGAGTCGACCCTGCACCTGGTTCTGCGTCTGCGTGGTGGCAT 20937 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || ||||| ||||| Sbjct 21622 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 21563 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| || | ||||| || |||||||| ||||| ||||| || || || ||||| Sbjct 21562 GATTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 21503 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | || | |||||||||| Sbjct 21502 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAAC 21443 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| | ||| |||| |||||||| Sbjct 21442 ATCCAGAAGGAGTCGACCCTGCACCTGGTGCTTCGTCTGCGTGGTGGCAT 21393 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || ||||| || ||||| ||||| Sbjct 20939 CATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACTCTGGACGTGGAGCCGTC 20880 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || || | || || || |||||||| ||||| |||||||| || || || || Sbjct 20879 GGACTCAATCGACAATGTTAAGCAGAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCA 20820 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || | || || | || | ||| ||||| Sbjct 20819 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGACTACAA 20760 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || |||| | ||| | || || || Sbjct 20759 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTTCGTCTTCGCGGCGG 20712 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||||||||| | || || | || || || || || Sbjct 21395 CATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACGATCACATTGGATGTAGAGCCTTC 21336 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||| || | ||||| || || ||||| |||||||||||||| || || || || Sbjct 21335 AGATTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAAGAAGGCATCCCCCCTGACCA 21276 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || ||| || ||| | || ||||| Sbjct 21275 GCAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGTGACTACAA 21216 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || || || | || | ||| | || |||||||| Sbjct 21215 CATCCAGAAGGAATCCACGTTGCACCTCGTGCTTCGTCTCCGTGGTGGCAT 21165 >SEQ15627 Length=1670 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||||||| | || || || || ||||| ||||| Sbjct 1599 ATGCAAATTTTTGTGAAGACCCTCACCGGCAAGACAATCACGCTCGACGTGGAGCCGTCG 1540 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || |||||||| ||||| ||||| || | ||| || ||| Sbjct 1539 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCAACCTGACCAA 1480 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | |||| | || | || ||||| || | |||||| || ||| | ||| |||||| Sbjct 1479 CGGCGTCTCATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTGAGCGACTACAAC 1420 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||||||||| | || |||| | ||| | || |||||| Sbjct 1419 ATTCAGAAGGAGTCGACGCTTCACCTGGTGCTTCGTCTACGTGGTGGC 1372 >seq321 Length=26016 Score = 141 bits (156), Expect = 8e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || || ||||||| || || || || ||||| Sbjct 9883 CATGCAGATTTTCGTGAAGACTCTTACGGGTAAAACTATTACCCTGGACGTCGAGCCGTC 9942 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||||||| | || || || || ||||| ||||| |||||||| || || || || Sbjct 9943 CGACTCGATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCA 10002 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | ||||| || || | ||||||||| Sbjct 10003 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGCACATTGAGCGATTACAA 10062 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 10063 CATCCAGAAGGAGTCGAC 10080 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||||||| | || || || || ||||| ||||| Sbjct 9200 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACACTCGACGTGGAGCCGTCG 9259 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 9260 GACTCCATCGACAACGTGAAGCAAAAAATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 9319 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || || | || | ||| |||||| Sbjct 9320 CAGCGCCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGCGACTACAAC 9379 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| || || | || | ||| |||| |||||||| Sbjct 9380 ATCCAGAAGGAGTCGACGTTGCACCTTGTGCTTCGTCTGCGTGGTGGCAT 9429 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || || | || ||||| ||||| Sbjct 9655 CATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTC 9714 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || || || ||||| ||||| |||||||| || || || || Sbjct 9715 GGACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 9774 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || | || | || ||||| || | || || | || | || ||||| Sbjct 9775 ACAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAA 9834 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | || ||||| ||||| | || |||||||| Sbjct 9835 CATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTCTCCGTGGTGGCAT 9885 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || || | || ||||| ||||| Sbjct 9427 CATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTC 9486 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || || || ||||| ||||| |||||||| || || || || Sbjct 9487 GGACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 9546 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || | || | || ||||| || | || || | || | || ||||| Sbjct 9547 ACAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAA 9606 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||||||| | || |||| | || | || |||||||| Sbjct 9607 CATTCAGAAGGAGTCGACCCTCCACCTGGTGCTTCGCCTTCGTGGTGGCAT 9657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434787712457280