Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1267 93.3 2e-14 >seq1267 Length=13579 Score = 93.3 bits (102), Expect = 2e-14 Identities = 383/597 (64%), Gaps = 18/597 (3%) Strand=Plus/Minus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 || |||||||| |||||||| || || ||| || ||| |||| || | | | Sbjct 5386 CGCGTGGTGGAGATCTACGGTCCCGAGAGTTCGGGCAAGACAACGTTGGCTTTGAGCTGC 5327 Query 66210 GTGGCCAATGCCCAGAAGGCCG---GTGGCAACGCTGCCTACATCGACGCTGAGCACTCC 66266 | || | || ||||| ||| |||| | ||| | ||||||||| || || | Sbjct 5326 ATTGCTGAGGCTCAGAAAACCGAGGGTGGAGTCTGTGCATTCATCGACGCAGAACATGCT 5267 Query 66267 CTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 66326 | ||| | | || |||||||| | || || ||| |||| ||| || ||| Sbjct 5266 ATCGACGCCCACTATGCCAAGGCATTGGGCGTTGACATCGATGCTCTCTACGTCTCGCAG 5207 Query 66327 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTG 66386 || ||| | || || | || || ||||||| |||| |||| || ||||| ||| | Sbjct 5206 CCAGACTCGGGTGAAGAAGCGCTAGAGATCGCTGACACCCTCATCCGATCTGG--AGCAG 5149 Query 66387 TCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66444 | ||| || || | ||| |||||| || ||||| ||||| || |||||||| |||| Sbjct 5148 TGGATCTCGTGGTGCTGGACAGTGTGGCTGCGCTGGTACCGCGTGCGGAGCTCGAGGGCG 5089 Query 66445 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66504 | || || ||| || | | || || || || || ||| ||||| ||||||| Sbjct 5088 AGATGGGAGACCAGCAGATTGCGCTCCAGGCACGACTTATGAGTCAGGCATTGCGCAAAT 5029 Query 66505 TCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCG 66561 | ||||| | |||||| |||| ||| | | ||| |||||||| | || Sbjct 5028 TGACCGGATCGCTCTCCAAGTCCAATTGCACCATTA---TCTTCCTCAACCAGATCCGTC 4972 Query 66562 AGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66621 ||||| | || | | | || || || ||| ||| | || || | ||| ||| Sbjct 4971 AGAAGGTAGGGATCAT---CTTTGGGTCGCCCGAAGTCACGTCCGGTGGTACGGCGTTGC 4915 Query 66622 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGAT 66680 | | ||||| || || || | ||| | || |||| | | ||| || ||||| || Sbjct 4914 GCTATTACGCGTCGGTGCGATTAGATATTCGCCGCAA-GACGGCGATCAAAGAAGGTGAC 4856 Query 66681 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG 66737 | | ||||| ||| || ||| ||||| | |||||||||||||| ||||| Sbjct 4855 CAAGTCGTCGGGAACGAAACGGTGGTTAAGGTGGCTAAGAACAAGCTGGCTTCGCCG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240889404668700