Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq465 147 2e-30 >seq465 Length=22214 Score = 147 bits (162), Expect = 2e-30 Identities = 290/421 (69%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCT--CTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGT 6563 |||||||| || ||| | |||| || || || | ||| | || | |||||||| || Sbjct 6449 GGGAACGGCCGTGGCGTACGCGTT--AGTTGCTTCTGAAGCGGTTCCACGTGGTTCAAGT 6506 Query 6564 AGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | | ||| ||||| || | ||| | | ||| ||||| | || | || || | Sbjct 6507 ACACATGTGCATCGCCGATAACATGGATGAACTCGCCAGGTTTTAGTCCTGCTACTTGGG 6566 Query 6624 CGATCATGTACGTG--AGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 | | || || |||| |||| |||||| || |||||||||||||| || || | ||||| Sbjct 6567 CAACCA-GT-CGTGTCAGCAAAGCGTAGCTGGCAATGTTGAACGGAACACCGAGGCCCAT 6624 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 || |||| || || || | ||||||||||| |||||||| || |||||||| || || Sbjct 6625 ATCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCCCCATCAGCCACGTAGAACTGACA 6684 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 || |||| ||||| || ||||||||| || ||| ||||||||||| | | Sbjct 6685 GAACATGTGACACGGAGGCAGCGCCATCTCGTTCAGGTCCGCAGGGTTCCACGCCGATAA 6744 Query 6802 CACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGT 6860 || |||| |||||| |||||| | || ||| |||||| | | || || |||| Sbjct 6745 GACAATCCGCCTGTCACTTGGGTTCGTCCGCAGCTTGTGGATCAC-TTCAGCGAGTTGGT 6803 Query 6861 CCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCC 6920 || | |||||||| | ||||| || | | | |||| ||||||||||| | || Sbjct 6804 CCACGCCCTGTCCAGTGTAGTCTGCATGCATGTCTGTGTACTTGGCCCCAAAGTGGCGCC 6863 Query 6921 A 6921 | Sbjct 6864 A 6864 Score = 147 bits (162), Expect = 2e-30 Identities = 290/421 (69%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 34424 TGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCG 34483 ||| | ||||||||||| |||| | | | || ||||| | |||||||| | | Sbjct 6864 TGGCGCCACTTTGGGGCCAAGTACACAGACATGCATGCAGACTACACTGGACAGGGCGTG 6805 Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 ||||| || || | | |||||| ||| || | |||||| |||||| |||| || Sbjct 6804 GACCAACTCGCTGAA-GTGATCCACAAGCTGCGGACGAACCCAAGTGACAGGCGGATTGT 6746 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | ||||||||||| ||| || ||||||||| || ||||| |||| | Sbjct 6745 CTTATCGGCGTGGAACCCTGCGGACCTGAACGAGATGGCGCTGCCTCCGTGTCACATGTT 6686 Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 ||| || |||||||| || |||||||| ||||||||||| | || || || |||| || Sbjct 6685 CTGTCAGTTCTACGTGGCTGATGGGGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGA 6626 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCT--CACGTACATGATC 34720 ||||| | || || |||||||||||||| || |||||| |||| |||| || || | Sbjct 6625 TATGGGCCTCGGTGTTCCGTTCAACATTGCCAGCTACGCTTTGCTGACACG-AC-TGGTT 6568 Query 34721 GCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATC 34780 || || || | || | ||||| ||| | | ||| | || ||||| ||| | Sbjct 6567 GCCCAAGTAGCAGGACTAAAACCTGGCGAGTTCATCCATGTTATCGGCGATGCACATGTG 6508 Query 34781 TACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAG--AGCCCCGACCGTTCC 34838 ||| |||||||| | || | ||| | || || || |||| | ||| || ||||||| Sbjct 6507 TACTTGAACCACGTGGAACCGCTTCAGAAGCAACT--AACGCGTACGCCACGGCCGTTCC 6450 Query 34839 C 34839 | Sbjct 6449 C 6449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448127702752080