Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq321 107 1e-18 seq238 104 2e-17 >seq321 Length=26016 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || ||||| ||||| || || || || || || | | Sbjct 9884 ATGCAGATTTTCGTGAAGACTCTTACGGGTAAAACTATTACCCTGGACGTCGAGCCGTCC 9943 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || || || ||| ||||| ||||| | || || || || Sbjct 9944 GACTCGATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 10003 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || ||||| | ||||| || ||||||||||| Sbjct 10004 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGCACATTGAGCGATTACAAC 10063 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 10064 ATCCAGAAGGAGTCGAC 10080 >seq238 Length=29854 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || ||||| ||||| || || ||||| || || | || Sbjct 21166 ATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTCG 21107 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || ||||| ||| ||||| ||||| | || || || || Sbjct 21106 GACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 21047 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| ||||| || |||| |||||| | | || |||||| Sbjct 21046 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAAC 20987 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 20986 ATTCAGAAGGAGTCGAC 20970 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || || |||||||| ||||| || || | Sbjct 21625 AAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACGATCACGCTCGACGTGGAGCCG 21566 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | | || | | || || |||||| ||||| ||||| | || || ||| Sbjct 21565 TCGGATTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCCCCCTGAT 21506 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || || || || | || || | |||||||| Sbjct 21505 CAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTAC 21446 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 21445 AACATCCAGAAGGAGTCGAC 21426 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || ||||||||||| || || || | || Sbjct 20938 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACTCTGGACGTGGAGCCGTCG 20879 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| || || || |||||| ||||| ||||| | || || || || Sbjct 20878 GACTCAATCGACAATGTT-AAGCAGAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCA 20820 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | || || | |||| ||||| Sbjct 20819 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGACTACAA 20760 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 20759 CATCCAGAAGGAGTCGAC 20742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337910571531812