Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq321 163 7e-35 seq9369 161 2e-34 seq238 132 1e-25 seq504 125 2e-23 SEQ15627 118 3e-21 seq1885 114 3e-20 seq965 114 3e-20 >seq321 Length=26016 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| | || || || || |||| ||||| ||| || ||| | ||||| Sbjct 9411 AGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCC 9352 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| ||||||||||| || || || ||||| || ||||| ||||||||||| Sbjct 9351 TCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 9292 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || ||||||||||| ||||||| ||| || | |||||||| | ||||| ||| Sbjct 9291 TGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTC 9232 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| |||||||| || | ||| | ||||| || || Sbjct 9231 TTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTTGTG 9194 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || |||||||| || || || || || | ||||| || || ||| Sbjct 9649 ACGAAGGCGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 9590 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| ||||||||||| ||||| ||||| |||||||||||||| || || || || Sbjct 9589 ACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCC 9530 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| || || | ||| || | ||||| || || Sbjct 9529 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAA 9470 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||| |||||||| ||||| || || Sbjct 9469 CGTGATGGTCTTGCCGGTCAACGTCTT 9443 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || |||| ||||||||| ||| || | |||||| Sbjct 10095 AGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCT 10036 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 10035 TCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 9976 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||||| || || | ||| || | || ||||| | || || || Sbjct 9975 TGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTT 9916 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| || | ||| | ||||| Sbjct 9915 TTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| ||||| || || || || | ||||| || || ||| Sbjct 9877 ACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 9818 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| ||||||||||| ||||| ||||| |||||||||||||| || || || || Sbjct 9817 ACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCC 9758 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||||| || || | ||| || | ||||| || || Sbjct 9757 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAA 9698 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||| |||||||| ||||| || || Sbjct 9697 CGTGATGGTCTTGCCGGTCAACGTCTT 9671 >seq9369 Length=2874 Score = 161 bits (178), Expect = 2e-34 Identities = 213/297 (72%), Gaps = 9/297 (3%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || ||||||| | || ||| | | Sbjct 1544 AACTTTATATTTAATTTTTAGTGCTTTTGCAGGTGTTGTAGGTACAACTTTATCTCTATT 1485 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | || || ||| | || Sbjct 1484 AATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAACCATCAATTATA 1425 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTT---------GTTAT 7610 || ||| | |||| || || || ||| ||||| |||| |||||| ||||| Sbjct 1424 TAATGTTGTAGTTACTGCTCACGCTTTTATTATGGTTTTTTTTTTTTTTTTTTTAGTTAT 1365 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | | | || || ||||| || ||||| || |||||||||||||||||||| ||||| Sbjct 1364 GCCTGCTTTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCACCTGA 1305 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||||||||| ||| | | || ||||| |||||||| ||| |||| || | ||||| Sbjct 1304 TATGGCTTTCCCACGTATGAATAATATTAGTTTTTGGTTATTACCTCCAGCTTTATT 1248 Score = 122 bits (134), Expect = 2e-22 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||||||| ||||||||||| | || || | |||||| Sbjct 1029 AAAGGTAATCTATGAAAACTTAAACCAGGTGCTCTCATATTATAAATAGTTGAAATAAAA 1088 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 1089 TTAATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 1148 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| || |||| |||| ||| || || |||||||| || || Sbjct 1149 ACTGAAGGTCCAGAGTGTGCCTGTACACTAGA---TAATGGTGGATAAACTGTCCAACCA 1205 Query 371542 GT 371543 || Sbjct 1206 GT 1207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| ||||| || |||||||||||||| | | |||||| || || ||||| Sbjct 851 TTCTGGATGACCGAAAAACCAAAATAAATGTTGATATAATACAGGATCTCCACCACCTGA 910 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| | || |||||| ||||||||||||||||| |||| Sbjct 911 AGGATCATAGAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 954 >seq238 Length=29854 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 20718 CGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 20777 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| || || || ||||| || || || ||| Sbjct 20778 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCT 20837 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || ||||| ||| ||||| | ||| || | |||||||| | Sbjct 20838 TCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGA 20897 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||||||||| ||||| || || Sbjct 20898 GTGATCGTCTTGCCGGTCAATGTCTT 20923 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||||||| || || | ||||| Sbjct 21411 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCC 21470 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || || || || ||||| ||||||||||| Sbjct 21471 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 21530 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||| || ||||| | || || | |||||||| | |||||||||| Sbjct 21531 TGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTC 21590 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 21591 TTGCCGGT 21598 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || || | ||||| || || ||| Sbjct 20945 ACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 21004 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| ||||||||||| ||||| || ||||| || || || || Sbjct 21005 GCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCC 21064 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||||||||| || ||||| | ||| || | ||||||||| | Sbjct 21065 TTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAG 21124 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | ||| || | ||| | ||||| Sbjct 21125 GGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | |||||||| || |||| ||||| || || || | || || Sbjct 21183 AGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCC 21242 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| ||||| || ||||| || || || ||||| ||||| Sbjct 21243 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 21302 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| || ||||| | ||||| | || || || || ||||||||| Sbjct 21303 TGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTC 21362 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 21363 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 >seq504 Length=21349 Score = 125 bits (138), Expect = 2e-23 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || ||||| || || |||||||||||||||||||| Sbjct 7173 GAAAATTTGACCATCAGTAATAGAAATTACATTAGTTGGAATATAAGCAGAAACATCACC 7232 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| ||| ||||| |||| ||| |||| Sbjct 7233 AGCTTGGGTTTCAATAATAGGTAAAGCAGTTAATGAACCACCTCCAATTTTTCTATT 7289 Score = 89.7 bits (98), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 5006 ATATGATACAACACTT---CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATA 5062 || |||| || ||| | ||||| | || ||||| || ||||||| | |||| ||||| Sbjct 7518 ATCTGATTCAGCACCTTTACAATATTTAGCTCCATATACTGGTTGTGCTTTAGGTGAATA 7459 Query 5063 TTTTAGAGATAATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 ||||||||||||||||||||||||| | || | || || |||||| |||||| Sbjct 7458 TTTTAGAGATAATGGTAAACATGCTGTTATTTTTTATGACGATTTATCAAAACAA 7404 >SEQ15627 Length=1670 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || || | ||||| ||| || || | || ||| Sbjct 1388 AGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCT 1447 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || ||||||| || |||| ||||||||||| Sbjct 1448 TCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCC 1507 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||| || ||||| | ||| || | |||||||| | |||||| ||| Sbjct 1508 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTC 1567 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | || | |||||| || Sbjct 1568 TTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq1885 Length=10629 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || |||||| Sbjct 6213 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 6154 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| || || ||| |||| || | |||||||| | |||| Sbjct 6153 TTGTCCTGGATTTTCTGCTTGACGTTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 6094 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 6093 ATGGTCTTGCCCGTCA 6078 >seq965 Length=15598 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 1864 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 1805 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| |||||||||||||| | Sbjct 1804 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 1746 Query 6865 GTAAT 6869 | ||| Sbjct 1745 GCAAT 1741 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1177 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1236 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 1237 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1296 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 1297 AACGCGTTAGCT 1308 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 6064 AGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 6005 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 6004 TAACATGATGTATAGGGTCTGACAC 5980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192163900763066