Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq465 116 3e-21 seq440 87.8 1e-12 >seq465 Length=22214 Score = 116 bits (128), Expect = 3e-21 Identities = 202/289 (70%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 |||||||||||||||| | ||| || || ||||| || | |||| ||||| || Sbjct 6485 AGCGGTTCCACGTGGTTCAAGTACACATGTGCATCGCCGATAACATGGATGAACTCGCCA 6544 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29765 |||| ||| || | || || || | || || |||| || | || ||||||||| |||| Sbjct 6545 GGTTTTAGTCCTGCTACTTGGGCAACCA-GT-CGTGTCAGCAAAGCGTAGCTGGCAATGT 6602 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | || || || ||||| ||||| || | || | |||||| | |||||| || | ||| | Sbjct 6603 TGAACGGAACACCGAGGCCCATATCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCCC 6662 Query 29826 CGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCA 29882 | || |||||| ||||||| ||||| || |||||||| || ||||| || Sbjct 6663 CATCAGCCACGTAGAACTGACAGAACATG---TGACACGGAGGCAGCGCCATCTCGTTCA 6719 Query 29883 AGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| |||||||| || | | || || |||||||| |||||| Sbjct 6720 GGTCCGCAGGGTTCCACGCCGATAAGACAATCCGCCTGTCACTTGGGTT 6768 >seq440 Length=22882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 184/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| | | | |||||| | || ||| | || | Sbjct 21667 ACTCG-ATCTTCTCGAGGATGAGCTGTCCCACGCGGTCGCCGCGCTTGACGGGGAAATCC 21725 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | | ||| ||||| || ||||| | |||||| | |||||||| ||| | || Sbjct 21726 TCGCTCGCGTGGTTGAACAGGATCACGCCCACGTTGCCTCGGTAGTCGGCGTCGATGACG 21785 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 || || ||| || || || || ||||| || ||||| || | || ||||| | | || Sbjct 21786 CCAGCGCCGGTATCGATGAATTTCTTCAGAGCGAGGCCAGAGCGAGGCGCCACGCGGGCG 21845 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||||| | | | ||||||||||| || || || |||| | | Sbjct 21846 TAGCAGCCGTCGGGCACGGCGATGACCAGGTCCGTCTTGACGAGACCCTTGCCACCCGCG 21905 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 |||| ||| || || ||||||| ||||| Sbjct 21906 GGGATGACGGCGTCGTAGGCGGCCGAGAGGTC 21937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406044204209554