Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq465 125 5e-24 seq440 93.3 3e-14 >seq465 Length=22214 Score = 125 bits (138), Expect = 5e-24 Identities = 263/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 |||||||||||||| | || ||| || || || || || | |||| ||||| || Sbjct 6485 AGCGGTTCCACGTGGTTCAAGTACACATGTGCATCGCCGATAACATGGATGAACTCGCCA 6544 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 27259 |||| ||| || | || || || | || || |||| || | || ||||||||| |||| Sbjct 6545 GGTTTTAGTCCTGCTACTTGGGCAACCA-GT-CGTGTCAGCAAAGCGTAGCTGGCAATGT 6602 Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC 27319 | || || || ||||| ||||| || |||| | |||||| | ||| || || | ||| | Sbjct 6603 TGAACGGAACACCGAGGCCCATATCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCCC 6662 Query 27320 CATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGT 27379 |||| ||||| |||||||| | ||| |||||||| || ||||| | || || Sbjct 6663 CATCAGCCACGTAGAACTGACAGAACATGTGACACGGAGGCAGCGCCATCTCGTTCAGGT 6722 Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGA 27436 | |||||||| || | | || || |||||||| |||||| ||| | || Sbjct 6723 CCGCAGGGTTCCACGCCGATAAGACAATCCGCCTGTCACTTGGGTTCGTCCGCAGCTTGT 6782 Query 27437 GGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCC 27495 || ||| || || || || ||||| ||| || | ||||||| | |||||| Sbjct 6783 GGATCAC----TTCAGCGAGTTGGTCCACGCCCTGTCCAGTGTAGTCTGCATGCATGTCT 6838 Query 27496 GTGTACTCTGCTCCGAAATGCCTCCA 27521 ||||||| || || || || | ||| Sbjct 6839 GTGTACTTGGCCCCAAAGTGGCGCCA 6864 Score = 86.0 bits (94), Expect = 5e-12 Identities = 227/345 (66%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 || || ||||| ||| ||| | ||||||| | |||||| ||||||| || || || Sbjct 6918 AGTTGGTCCACGCCCTGCCCAGTGTAGTCTGCATGCATGTCTGTGTACTTGGCCCCAAAG 6977 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 || | ||| ||||| || || |||||||| |||||||| |||| | | || | || Sbjct 6978 TGGCGCCACTGGAATCCATAGACCGGTCCAAGGTCTCCGACTTCTCGGGACTGCAGTCCT 7037 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 27633 | |||||| | || | || || || |||||||||| | | |||||| Sbjct 7038 CGACTGTCCAGGTACTCACGCGATCCATTTCCGTCCCAGATGTGAATATCCTTCTGCTGT 7097 Query 27634 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 27693 ||| | | | | ||| || || | |||||||||||| |||||| | || | | Sbjct 7098 AGCGTGTGCGCGCTAGTGTCGCCGCTAATGAACCACAGCAGTTCCTCCGCCACTCCTCGC 7157 Query 27694 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGTACCTGGC 27749 || || || | ||||||||| || | || ||| |||||| | || | |||| Sbjct 7158 CAGAACACACGCTTGGTCGTCAGCAATGGGAACACGTTGTCCC-TCAGACTAAACCTCAT 7216 Query 27750 CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 27794 ||| | ||||| | ||||| || || ||||| | |||||| Sbjct 7217 CTGCGCTCCAAAAAGCGACAACGTGCCTGTTCCCGTGCGGTCTCC 7261 >seq440 Length=22882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 197/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| | | | ||| Sbjct 21644 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGTCCCACGCGGTC 21703 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 ||| | |||||| | || | || | | ||| ||||| || ||||| | |||||| Sbjct 21704 GCCGCGCTTGACGGGGAAATCCTCGCTCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 21763 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | || || || ||| || || || || ||||| || ||||| Sbjct 21764 TCGGTAGTCGGCGTCGATGACGCCAGCGCCGGTATCGATGAATTTCTTCAGAGCGAGGCC 21823 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 || | || ||||| | | ||||| ||| ||||| | ||||||||||||||| Sbjct 21824 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACGGCGATGACCAGGTCCGTCTT 21883 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTC 45119 || || || |||| | ||||| ||| | || ||||||| ||||| Sbjct 21884 GACGAGACCCTTGCCACCCGCGGGGATGACGGCGTCGTAGGCGGCCGAGAGGTC 21937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369398943512609