Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7045 170 3e-37 >seq7045 Length=3816 Score = 170 bits (188), Expect = 3e-37 Identities = 392/580 (68%), Gaps = 13/580 (2%) Strand=Plus/Plus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 ||||| || | ||| || | || || || || |||| |||||||| || || ||||| Sbjct 2775 CCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCAGGCATGAGGCCTCGCTTC 2834 Query 46711 TTGAGCCAAAATATAGCCGC-GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAA 46769 |||||||| || || || || ||| || || |||||||| || ||||| || | || || Sbjct 2835 TTGAGCCAGAAAAT-GCTGCAGAACGACCCCGAAAAGAAGATACCTTCCACTGAAGCAAA 2893 Query 46770 TGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCACC-TTTGA--GCCCAA 46824 || | | || ||| ||| || | || || | |||| ||| | ||||| Sbjct 2894 CGCCAGCAATCGCTCCGGGTAGGAC-GACA-CACGCGGGTCGCACCATTTCAATGCCCAG 2951 Query 46825 TCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA 46884 | || || || | || || || ||||| || || ||| | ||| ||||||| || Sbjct 2952 TTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGATGGCACGCAGCAGATAGTTTTTCTCC 3011 Query 46885 TCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCA 46944 || |||| || | ||| || || || | || || | ||| || || ||||| ||| Sbjct 3012 ACAGTATCCTTGATATACGTGTCAATGAGCAGTGAGTAGACTTCGGAGTGGATGTTCTCA 3071 Query 46945 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAAT 47004 || || ||||| || ||||| || |||| ||||||| | ||| || || | | || Sbjct 3072 ATGGCGATCTGGAAACCGTAGAAGCATCGAGCTTCAGGCACCTGCACTTCGTTGCTGAA- 3130 Query 47005 CGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACAT 47062 ||||| | || ||| ||||| || || |||||||| ||||| |||||||| | || | Sbjct 3131 -GTTCATGGCCAGATTTTCATTGACGATCCCATCACTGGCAGCGAAAAATGCGAGCACGT 3189 Query 47063 GTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 |||| || || | |||| || ||||| | ||| || |||| || | | Sbjct 3190 GTTTGATGAAGTGGCGCTCATTATCCGTGAGTTTCTCCCAATCTTTGAGGTCGTGCACGA 3249 Query 47123 TATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATAT 47182 ||| | ||| || ||||||||||| || || || ||||| || ||||| | ||| | || Sbjct 3250 GATCGAGTTCCTCGGCTGTCCAGAACGAAGCTTCCGCTTTCTTGTACATCTGCCACACAT 3309 Query 47183 CACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 | | | ||| ||||| || | || |||| ||| ||||| Sbjct 3310 CGTGTTCTTGAATCGGGAAGAGCACGAATCGATTGGGATT 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712720172124480