Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq321 149 1e-30 seq1885 114 3e-20 seq238 113 1e-19 SEQ15627 86.0 1e-11 >seq321 Length=26016 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || ||||||||||||||| || || | |||||| Sbjct 10095 AGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCT 10036 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || ||||||||||| || | ||||||||| | | || |||||||| || Sbjct 10035 TCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 9976 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || ||| | || | ||| || ||| || || || ||||||||| Sbjct 9975 TGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTT 9916 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||||||||| | |||||| Sbjct 9915 TTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || | || ||||| || ||||||||||| ||| | ||| | ||||| Sbjct 9411 AGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCC 9352 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || || |||||||| || | ||||||||| | | ||||||||||| || Sbjct 9351 TCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 9292 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||||| || || | || | | ||| || ||| || || || || || || Sbjct 9291 TGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTC 9232 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | |||||||||||||| |||||| || Sbjct 9231 TTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTT 9197 >seq1885 Length=10629 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || ||| |||||||| || || ||||| || ||||| | || Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 6123 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6064 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 6063 ATCTGCATGATTCCCT 6048 >seq238 Length=29854 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || || |||||||| || | ||| | || || Sbjct 20955 AGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCC 21014 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | ||| |||||||| ||| Sbjct 21015 TCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 21074 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | ||| || || || || || ||||||||| Sbjct 21075 TGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGTT 21134 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||| ||||| | |||||| Sbjct 21135 TTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||||||| | || | ||||| Sbjct 21411 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCC 21470 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | |||||| || | | ||||||||||| || Sbjct 21471 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 21530 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||||| | || | || || ||| || || || || || || Sbjct 21531 TGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTC 21590 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| |||||||| |||| |||||| || Sbjct 21591 TTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||| | || | ||||| Sbjct 20727 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCC 20786 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | ||| |||||||| || Sbjct 20787 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 20846 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || || ||| | || | ||| || ||| || || ||||| || || Sbjct 20847 TGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTC 20906 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||||| || | |||||| Sbjct 20907 TTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 >SEQ15627 Length=1670 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || || |||||||| ||| | || | || ||| Sbjct 1388 AGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCT 1447 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | | | ||||| | ||||||||||| || Sbjct 1448 TCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCC 1507 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||||| | || | ||| || ||| || || || || || || Sbjct 1508 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTC 1567 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| |||||||| || | ||||| || Sbjct 1568 TTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153465423554169