Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq321 138 8e-28 seq1885 136 3e-27 seq238 123 2e-23 SEQ15627 118 8e-22 >seq321 Length=26016 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||||||| | | ||| | || || Sbjct 10093 CACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTC 10034 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| || | ||| | |||||||| ||| Sbjct 10033 TAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 9974 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | || | ||||| | || || |||| ||||| || || Sbjct 9973 AATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTT 9914 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || ||||||||||| || |||||| Sbjct 9913 ACCCGTAAGAGTCTTCACGAAAATCTGCATG 9883 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| |||||| || |||||| || |||||||| || Sbjct 9886 CATGCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTC 9827 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | || || |||||||| || |||||||| | || || || || | Sbjct 9826 ACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGG 9767 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||||||||||| | | || | ||| | | || Sbjct 9766 AGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTC 9707 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| ||| || ||||| || || | |||||||| ||||| |||||| Sbjct 9706 CACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| || |||||||| || || || | || || Sbjct 9637 CACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTC 9578 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | || || || || | ||| | |||||||| ||| Sbjct 9577 TAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTG 9518 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | || | ||| | | ||||| |||| ||| || ||||| Sbjct 9517 AATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTT 9458 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||||| ||||| |||||| Sbjct 9457 GCCGGTCAACGTCTTCACAAAGATCTGCATG 9427 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| ||||| | ||| |||||| ||||||||||| || Sbjct 9430 CATGCCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTC 9371 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || |||||||| || || ||||| | |||||||| || | Sbjct 9370 GCTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGG 9311 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||||| | | |||| ||| | | || Sbjct 9310 GGGAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTC 9251 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 ||| || | || || ||||| || || | |||||||||||||| ||||| |||| Sbjct 9250 CACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTTGTG 9194 >seq1885 Length=10629 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | |||||||| ||| || |||||||| | | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||| |||||| | ||||| |||| ||| || ||||| ||||| ||||||||||| | Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 44328 AGATTTGCATGAT 44340 |||| |||||||| Sbjct 6065 AGATCTGCATGAT 6053 >seq238 Length=29854 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || || |||||| |||||||||||||| Sbjct 21392 CATGCCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 21451 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || |||||||| || || ||||| | |||||||||||| | Sbjct 21452 GCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGG 21511 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || |||||||| | | | || | || | | || Sbjct 21512 GGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTC 21571 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| |||||||| || |||||||||||||| ||||| ||||| Sbjct 21572 CACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| ||| || || | || || Sbjct 20729 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTC 20788 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | ||||||||| || | ||| | |||||||| ||| Sbjct 20789 GAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 20848 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || |||||||| || ||| | || | ||| | | ||||| |||| || |||||| Sbjct 20849 AATTTTCTGCTTAACATTGT--CGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTC 20906 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | |||||||| || || |||||| Sbjct 20907 TTGCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| | |||| ||||| ||||||||||| || || ||| |||| || Sbjct 21185 CACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTC 21244 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||| || | || | ||||| || ||| Sbjct 21245 GAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTG 21304 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | | | || | || | | || || |||| || |||||||| Sbjct 21305 AATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTT 21364 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||| |||||||| |||||| Sbjct 21365 GCCGGTCAACGTCTTGACGAAGATCTGCATG 21395 >SEQ15627 Length=1670 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| || |||||||| ||| || ||| |||| || Sbjct 1390 CACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTC 1449 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | |||| | || || | | | |||||||| ||| Sbjct 1450 GAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTG 1509 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||| | | | || | ||| | | ||||| || | ||| || ||||| Sbjct 1510 AATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTT 1569 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| || |||||||| Sbjct 1570 GCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359884931700063