Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1885 159 3e-34 SEQ15627 143 2e-29 seq321 132 4e-26 seq238 132 4e-26 seq8293 109 5e-19 >seq1885 Length=10629 Score = 159 bits (176), Expect = 3e-34 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | || ||||||||| |||||| ||||| ||| | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACGTTG 6127 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 6126 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6067 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 6066 AAGATCTGCATG 6055 >SEQ15627 Length=1670 Score = 143 bits (158), Expect = 2e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 ||||||| || |||||||| | |||||| || ||||| ||||||||||||||| |||| Sbjct 1368 CACCGCCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGT 1427 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 || |||||||| |||| |||||||||||||| || || || || ||| ||||||| | Sbjct 1428 CGCTCAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAG 1487 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGAC 41809 ||| | ||||||||| ||||| ||||| ||| | | | | ||| || | Sbjct 1488 GTTGAATTCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAGTCCGACGGC 1546 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || | ||| || || || || || || ||||| || ||||| ||||| || Sbjct 1547 TCCACGTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq321 Length=26016 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || |||| ||| ||||||||| ||||| |||||| Sbjct 9427 GCCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCT 9368 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| ||||| || |||||||| ||||| | ||| Sbjct 9367 CAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGG 9308 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| |||||||||||| ||| | | | | ||| || ||||| Sbjct 9307 AATTCCTTCCTTGTCCTGAATTTTTTGCTTC-ACGTTGTCGATGGAGTCCGACGGCTCCA 9249 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | || || || || || |||| ||||| ||||| |||||||| || Sbjct 9248 CGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTT 9197 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || || ||||||||| ||||| || ||| Sbjct 10111 GCCTCCACGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCT 10052 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 10051 CAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 9992 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| || || |||||| || | | | | |||| || ||| | Sbjct 9991 AATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACATTGTCAATCGAGTCGGACGGCTCGA 9933 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || || ||||||||||| || ||||| ||||||||||||||| Sbjct 9932 CGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTGCATG 9883 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||||||||| ||||| Sbjct 9655 GCCACCACGAAGGCGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACT 9596 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| || || || || || |||||||| | || Sbjct 9595 CAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGG 9536 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 9535 GATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATTGAGTCCGACGGCTCCA 9477 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || || || || |||| |||||| || || ||||||||| Sbjct 9476 CATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9427 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||||||||| ||||| Sbjct 9883 GCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACT 9824 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| || || || || || |||||||| | || Sbjct 9823 CAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGG 9764 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 9763 GATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATTGAGTCCGACGGCTCCA 9705 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || || || || |||| |||||| || || ||||||||| Sbjct 9704 CATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 >seq238 Length=29854 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||| || ||||||||||||||| ||||| Sbjct 20939 GCCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACT 20998 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || || |||||||| ||||| || || ||||| ||||| | ||| Sbjct 20999 CAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGG 21058 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| || |||||||| ||| | | | | ||| || |||| Sbjct 21059 GATGCCTTCCTTGTCTTGAATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGTTCCA 21117 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || ||||||||||| || ||||| ||||||||||||||| Sbjct 21118 CGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | |||||| ||||| || ||||||||| ||||| |||||| Sbjct 20712 CCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20771 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || || || ||||| ||||| | || Sbjct 20772 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 20831 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||||| ||||| ||| | | | | ||| || |||||| Sbjct 20832 ATGCCTTCCTTGTCCTGAATTTTCTGCTT-AACATTGTCGATTGAGTCCGACGGCTCCAC 20890 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || ||||| || || |||| ||||| || |||||||||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 125 bits (138), Expect = 7e-24 Identities = 170/238 (71%), Gaps = 18/238 (8%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || |||| |||| |||||||| ||||| ||||| Sbjct 21167 GCCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACT 21226 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| |||||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 21227 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGG 21286 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 | || || |||||| || || ||||| |||| ||||| |||| Sbjct 21287 GATGCCTTCTTTGTCCTGAATCTTCTGCTT----GACG-----TTGTCGATCGAATCTGA 21337 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || |||| || ||||| || || |||| |||||| ||||| ||||||||| Sbjct 21338 AGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCATG 21395 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| || ||||||||| ||||| || ||| Sbjct 21395 GCCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCT 21454 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || |||||||||||||| ||||| || || ||||| || || | ||| Sbjct 21455 CAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGG 21514 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||||| ||||| ||| | | | | || || ||||| Sbjct 21515 AATTCCTTCCTTGTCCTGAATTTTCTGCTT-GACGTTGTCGATCGAATCCGACGGCTCCA 21573 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | ||| ||||| || || || || ||||| || || |||||||| || Sbjct 21574 CGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 >seq8293 Length=3242 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || ||||| || ||||||||| ||||| ||||| Sbjct 2573 ACCACCACCACGCAGACGGAGCACTAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 2514 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| |||||||||||||| ||||| ||||| ||||| ||||| | Sbjct 2513 CGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 2454 Query 41752 GGGAA 41756 ||||| Sbjct 2453 GGGAA 2449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462165083426800