Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 154 3e-32 seq1092 113 1e-19 seq74 91.5 3e-13 >seq4 Length=231283 Score = 154 bits (170), Expect = 3e-32 Identities = 457/693 (66%), Gaps = 25/693 (4%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| |||||| Sbjct 217919 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 217860 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || |||||| ||||||||||| ||||| |||||||| || | |||||| || || Sbjct 217859 GTGCGACTCGATATGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 217800 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || |||| | |||| | || || |||| ||| || | || Sbjct 217799 CTTCCACACCTGGCCACTGGTCGGCTCCACCTCACCAGTCAGCATCTTGATCATCGTAGA 217740 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| |||| ||| |||| | || | | || | | || | Sbjct 217739 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATAC--GACTCGACAGAGCACACGTCACT 217682 Query 319230 CAC--GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 319286 | ||||| | | || |||||||| |||| | || || ||| || Sbjct 217681 GAAATGTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTACGAG-CAGTTCGTCAG 217623 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAA--- 319343 ||||||| |||| ||||| | | ||||| || ||||| ||||| Sbjct 217622 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCCGGGAAAAC 217563 Query 319344 ---CTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 319400 |||| |||| ||| || |||| || ||||||| | | || || || Sbjct 217562 GAACTTC-ACGT--TCTCCGACTCG---AGCTCGTAGTAGGCCTTAGCCTCAGGCTTCTG 217509 Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| || || || |||||||| |||||||||| || | |||||| || Sbjct 217508 CTCCACGAACTTCGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGT---TTCGTAGTG 217452 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 |||||| |||||| || ||| ||||| || |||||||| ||||| || | | | Sbjct 217451 GATAATGTTGGTGCAGACCTTGTCAAGGAAACCAGAGTCGTGCGACACCATGATAGAGGT 217392 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | | | || ||||||| ||| |||| ||| ||||| ||| | Sbjct 217391 CACGTTCGGCAAGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCCAAG 217334 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 217333 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 217274 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTG 319671 | |||||||| ||||| || || ||||| ||| Sbjct 217273 TCCAGTTTCATCTTCCAACCACCAGAAAGGGTG 217241 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||||||||||||| ||| |||||||||||||| || ||||| || Sbjct 217061 GGGGAAACCCTCAAGCTGGCCGTTGGAAATGGCGCGCATCAGGGTCGACTTACCACAACC 217002 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || |||||||||||||| |||| ||| || ||||| | || | ||||||||| Sbjct 217001 GTTGGGGCCACACAGACCGTAACGGTGTCCACGCTTCAGACGAAGGCGGGCGTTGTTCAG 216942 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 |||||| | ||||| || || || || || ||||| Sbjct 216941 AAGAATCATACCACCGTAGGCAAGCGAGAACTCACA 216906 >seq1092 Length=5749 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 336 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 277 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 276 CCCACGGTGGGC 265 >seq74 Length=89887 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1224 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1283 Query 165771 CCACG 165775 ||||| Sbjct 1284 CCACG 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057786565592060