Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq55 105 7e-18 seq12 102 8e-17 >seq55 Length=127487 Score = 105 bits (116), Expect = 7e-18 Identities = 304/461 (66%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || |||||||| || | ||||||||| | |||||| | ||||| || | Sbjct 35740 ACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGA 35799 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | || ||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 35800 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCG 35859 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| || | ||| ||||| | | || || | ||| | | | Sbjct 35860 AGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC 35919 Query 17136 TGTTACGAATCCATTTCTGCACCCACT-CGGCTT--TTTGCTTTATGCAATCCATCGTTT 17192 | | ||| | | |||| | || ||| ||||| | || ||||| | Sbjct 35920 GAGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGC---ACACACGGGATCGTCT 35976 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTC--CTGTAGGTCGATTATATACGTATCGATGAG 17250 | ||||| | | | ||||| || |||| ||| | || ||||| ||||| || Sbjct 35977 CGATGGCACGCAGCAGATAATCTTTCTCGACTGT--GTCCTTGATGTACGTGTCGATCAG 36034 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 ||| ||| | ||| ||||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 36035 CAGGGAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGAAACCGTAGAAGCAGCG 36094 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATG 17368 ||| || | | || | || | ||| |||| ||||| || ||||| ||||| Sbjct 36095 GGCCTCGGGCACCTGGATCTCATTGCTGAA--GTTCATGGCTAGGTTCTCGTTAACGATA 36152 Query 17369 CCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || || |||||||| || | | ||||| ||||| Sbjct 36153 CCGTCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAA 36193 >seq12 Length=196586 Score = 102 bits (112), Expect = 8e-17 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| |||||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 58575 ATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAATGTTCTCAATGGCAATCTGG 58634 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || ||||| | | || || || | ||| |||| || | Sbjct 58635 AAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCA 58692 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | || ||||||||||| |||||||| || ||||| || || | | ||||| ||||||| Sbjct 58693 GGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGAGCACGTGCTTGATGAAAT 58752 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| || || || ||||||||| | || | | ||| | || | Sbjct 58753 GGCGCTCGTTATCCGTGAGGTTGCCCCAGTCCTTCAGGTCGTGCACGAGATCAAGCTCCT 58812 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || |||| | ||||| || ||||| | ||| | |||| | || | Sbjct 58813 CAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACATCTGCCACACCTCATGCTCCTGGA 58872 Query 17532 TGGGGAA 17538 ||||||| Sbjct 58873 TGGGGAA 58879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517527731738160