Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq439 140 4e-28 seq12 129 7e-25 >seq439 Length=25118 Score = 140 bits (154), Expect = 4e-28 Identities = 776/1235 (63%), Gaps = 10/1235 (1%) Strand=Plus/Plus Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 |||||| || ||||| |||||||| ||||| || || || || | | |||| || || Sbjct 18082 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAA 18141 Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 53562 ||||| || | ||||| |||||||| || | || |||||||| ||||||| || | Sbjct 18142 CGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCG 18201 Query 53563 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 53622 || | | | || || | ||| || | || || || || | || || | || Sbjct 18202 GTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTT 18261 Query 53623 ATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCC 53682 || || || | | || |||||||| || | ||| || | | || ||| Sbjct 18262 GTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAACTCC 18321 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || || ||| || | || | ||| |||| ||| || || || || |||| | Sbjct 18322 CTCCTCCACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGG 18381 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 | || || | || | |||| ||| | ||||| | ||| || || | || || Sbjct 18382 AGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCTG 18441 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 || || || |||| || ||||| || || ||||| ||| ||| |||||||| Sbjct 18442 CTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAAT 18501 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||||| || | ||||| ||| | | || || || | || | | | Sbjct 18502 CTGGGCGTCAAGGATCGCGAACCACAGCTGCTGGGCGTTGATGGTC--TTGCGAGCACGC 18559 Query 53923 --TTCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 ||| | ||||| | ||| | || |||||||| || ||||| | || | Sbjct 18560 CCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCGTAGA 18617 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 ||||||| ||||| ||||| | ||| ||||| || | ||| ||| | ||||| Sbjct 18618 GTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCA 18677 Query 54039 TAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 | |||||||| || | ||| | || || || || || | | | || |||||| Sbjct 18678 TGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTCGTTA 18736 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || |||||| ||||| |||||| | | | ||| | |||||||| |||| ||| Sbjct 18737 CCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAG 18796 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | || || ||| ||||||||| || | ||| | |||||| | ||| Sbjct 18797 ATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTG 18856 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 | ||||||||||| || ||||| |||||||| | |||||| || ||| ||| ||||| Sbjct 18857 AAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTG 18916 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 | ||||| ||||| || | || || || || ||| || ||||| | Sbjct 18917 TTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAG 18976 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || | || || || || ||||||||||| || |||||| ||| | || Sbjct 18977 GCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGG 19036 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || |||| ||| | || || || ||||| || | || || | |||||| Sbjct 19037 AAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGA 19096 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 || || | || | || | || | ||||||||| | ||||| | || || | | Sbjct 19097 GTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTG 19156 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || || || | || || ||||| | ||| || || || | ||| || | ||| || Sbjct 19157 TGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTG 19216 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 | | | ||| | | ||||| || || || || || |||| ||| ||||| Sbjct 19217 ACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCC 19276 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 || |||| ||||| | |||||||| | ||||| Sbjct 19277 CGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 >seq12 Length=196586 Score = 129 bits (142), Expect = 7e-25 Identities = 305/454 (67%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||||||| ||| | |||||||| | ||||| | ||||| || || | || Sbjct 58305 CACGCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGA 58364 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||||| Sbjct 58365 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGATCCCGAAAAGAA 58423 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC-----ATAACCGGCGC-TGTC 24307 ||| || || || || || || |||| || | || | || || ||| ||| Sbjct 58424 AATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTC 58483 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | |||| | | ||||| | |||||||| | ||||| || || ||||| ||||| Sbjct 58484 A---CACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGC 58540 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | || | || || ||| | | || || | || || || || | || || Sbjct 58541 ACGCAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTA 58600 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| |||||||| || || || |||||||| || | ||| || | Sbjct 58601 GACCTCCGAGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGG 58660 Query 24488 AATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| || || | | || |||| || | || || ||||| || ||||| ||| Sbjct 58661 CACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTG 58718 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 || || || || || | || || || || |||| Sbjct 58719 GCAGCGAAGAAAGCGAGCACGTGCTTGATGAAAT 58752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593701101761760