Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 322 5e-83 seq55 295 7e-75 seq168 159 4e-34 seq122 127 2e-24 seq1294 125 7e-24 seq228 102 8e-17 >seq12 Length=196586 Score = 322 bits (356), Expect = 5e-83 Identities = 588/850 (69%), Gaps = 22/850 (3%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 58903 GAGAACCCCCACCGCTTCGTGCTCTTCCCCATCCAGGAGCATGAGGTGTGGCAGATGTAC 58844 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || ||||| ||||| || |||||||| | |||||| | || || || || | || || Sbjct 58843 AAGAAGGCGGAGGCTTCCTTCTGGACGGCTGAGGAGCTTGATCTCGTGCACG-ACCTGAA 58785 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | || ||||||||||||||||||||||||||||| || || || Sbjct 58784 GGACTGGGGCAACCTCACGGATAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTT 58725 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| ||||||||||| ||||| |||||||| |||| | | ||| | |||||||| Sbjct 58724 CGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAGGTGCA 58665 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| | || || || |||||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 58664 GGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATTCACTCGGA 58605 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTT 116946 | || ||| ||||||||||||||| | | | | ||| || | | || | Sbjct 58604 GGTCTACTCGCTGCTCATCGACACGTACATCAAGGACACCATTGAGAAGGACCACC---T 58548 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 || || |||||||| || || || || | ||||||| | ||||| || | || Sbjct 58547 TCTGCGTGCTATCGAGACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTG 58488 Query 117007 G-ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 | | || || | | | | ||| || ||||| ||||| || ||||| || || |||| Sbjct 58487 GTGTGACCCGC-GTGTGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGG 58429 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || | ||||||||||| ||| | |||| || ||||||||||| ||||||||||||| Sbjct 58428 GCATTTTCTTTTCGGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 58369 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || |||| ||| ||||||||||| | | |||||||| |||| ||| || | Sbjct 58368 CTGGTCTGAGCTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCG 58309 Query 117186 CCTGTTTGCTG---TTCAAGCATTTGGTGCAGC-GACCGAGCGCGGCGCGCGTCAGGGAG 117241 | || | ||| | ||||| | ||| | | ||| || ||| || ||| Sbjct 58308 CGTGCCTCCTGTATTCCAAGCTCGTCAACAAGCTGCCGGAGAGC----CGCATCCATGAG 58253 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 ||||| | |||| || | |||||||| || | || |||| |||||| Sbjct 58252 ATCGTTCGCAACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAG 58193 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 ||| | || | || | | |||| || ||||||||||| || || ||| | ||| Sbjct 58192 CTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTG 58133 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC--CAACCCGCTGGACTTTATGA 117419 ||| | |||| || ||||| |||| |||||| |||||| | |||| ||| Sbjct 58132 CTGTACTCTCTGGGCGTGTCCAAGATCTAC--CACGCCAAGAACCCGTTCGACTGGATGG 58075 Query 117420 ACCTCATCTC 117429 || | ||||| Sbjct 58074 ACATGATCTC 58065 >seq55 Length=127487 Score = 295 bits (326), Expect = 7e-75 Identities = 420/589 (71%), Gaps = 14/589 (2%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||||| Sbjct 36344 GAACCCCAACCGTTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAA 36285 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 || |||||||| || |||||||| | |||||| | |||||| | ||| || ||| Sbjct 36284 GAAAGCCGAGGCATCTTTCTGGACTGCCGAGGAACTCGACCTGGTACACGACCTGAACGA 36225 Query 116713 CTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||| ||| ||| ||||| |||||||| ||||||||||||||||| |||||||| Sbjct 36224 CTGGGCCAAGC---TGACGGACAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTT 36168 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| || || ||||| ||||| |||||||| || | | | ||| | ||| | || Sbjct 36167 CGCAGCAAGTGACGGTATCGTTAACGAGAACCTAGCCATGAACTTCAGCAATGAGATCCA 36108 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| ||||||| || ||||||||||| || ||||| ||||| ||||| | |||||||| Sbjct 36107 GGTGCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGA 36048 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTT 116949 | | || || || |||||||||||| | | | ||||| | || | Sbjct 36047 AGTTTACTCCCTGCTGATCGACACGTACATCAAGGACACAGTCGAGAAAGATTATCTGCT 35988 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG--- 117006 | |||||||||||||| ||||| || || ||||||| | ||||| || | || Sbjct 35987 GCGTGCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTG 35928 Query 117007 -GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| | | | | | | | | ||||| ||| |||| ||||| || || |||| Sbjct 35927 TGATCCTC----GTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGG 35872 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| ||||| ||| | | || || ||||||||||| ||||||||||||| Sbjct 35871 GCATCTTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 35812 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 | || || | ||| |||||| | ||| | |||||||||| |||| Sbjct 35811 CTGGTCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCA 35763 >seq168 Length=56023 Score = 159 bits (176), Expect = 4e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || || ||| ||||||| || | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | |||| ||||| |||| |||| ||||| ||||||||||| | || Sbjct 51782 TCGGATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 51840 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | ||||| || | ||||| Sbjct 51841 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTA 51900 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| | ||| || | |||||| Sbjct 51901 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 51952 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| || | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||| |||| ||||| ||||||||||| | ||||| Sbjct 52241 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52299 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52300 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52359 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| | ||| || | ||||| Sbjct 52360 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGG 52407 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| || | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||| |||| ||||| ||||||||||| | ||||| Sbjct 52013 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52071 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52072 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52131 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| | ||| || | |||||| Sbjct 52132 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 52180 >seq122 Length=66504 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 10893 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 10952 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| || || ||||| | |||||| Sbjct 10953 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 11012 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 11013 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 11072 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 11073 ATCCAGAAGG 11082 >seq1294 Length=4314 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || || | ||||| || || ||||| | ||||| || | Sbjct 3833 AACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCC 3892 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | ||| | | |||| | ||| | || |||| ||||| |||||||| || | | Sbjct 3893 GTCGGACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTG 3951 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| ||| | |||| ||| ||||| |||||||| |||| || || || | ||||| Sbjct 3952 ACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACT 4011 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| | || || || || ||| |||| || | || ||| Sbjct 4012 ACAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4064 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || ||||| | ||||| || | | Sbjct 4065 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 4124 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| |||||||| || | ||||| Sbjct 4125 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 4183 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 4184 GCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAA 4243 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || ||| |||| || | || ||| Sbjct 4244 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4292 >seq228 Length=47695 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 37802 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 37743 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 37742 ACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 37683 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 37682 GGTGGTGGC 37674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201412057120