Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq122 122 1e-22 seq168 109 6e-19 seq1294 98.7 1e-15 >seq122 Length=66504 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 11082 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 11023 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | ||||||||| |||||| || |||| | | | Sbjct 11022 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10964 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 10963 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10904 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 10903 AAGATCTGCAT 10893 >seq168 Length=56023 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| ||| |||||| || | || || Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || ||||| |||| ||| | | | | || || ||||| |||| || || || | Sbjct 51814 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCT 51756 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || || ||||| || ||||| ||||| || Sbjct 51755 TGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| ||||| ||||| ||| |||||| || | || || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || ||||| |||| ||| | | | | || || ||||| || | || || || | Sbjct 52042 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| | |||||| || ||||| ||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| ||| |||||| || | || || Sbjct 52390 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52331 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 52330 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52271 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || ||||| |||| ||| | | | | || || ||||| || | || || || | Sbjct 52270 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 52212 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| | |||||| || ||||| ||||| Sbjct 52211 TACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 >seq1294 Length=4314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | || |||||| || || ||||| || ||| || || || Sbjct 4279 CGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 4220 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | |||||||||||| | || | || ||||||| Sbjct 4219 TCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| || || || || | ||| | | | | ||| || ||||| || | |||||| Sbjct 4159 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 4101 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| | ||||| |||||||| ||||| Sbjct 4100 CGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | || |||||| || || ||||| || ||| || || || Sbjct 4051 CGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 3992 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | |||||||||||| | || | || ||||||| Sbjct 3991 TCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 3932 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| || || || || | ||| | | | | ||| || ||||| || | |||||| Sbjct 3931 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 3873 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || || ||||| | ||||| || ||||| |||||| || Sbjct 3872 CGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATTGTT 3833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571797857997360