Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq12 127 4e-24 seq439 118 2e-21 >seq12 Length=196586 Score = 127 bits (140), Expect = 4e-24 Identities = 261/383 (68%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| |||||||| ||| |||| || || || |||||||||||||| |||||| |||| Sbjct 143826 CTTCCGCATTTGCTGTTCTACGGACCGCCAGGTACAGGCAAGACGTCCACCATCGTGGCA 143885 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAG---CGCGTGCTCGAGCTGAAC 254117 | | || || || ||| || | | | | ||| | || ||| ||||| Sbjct 143886 GTAGGTCGTCAGCTCTTCGGCCCGGATTTCCGCAAAAACGGCCGCTTCCTAGAGTTGAAC 143945 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 143946 GCGTCCGATGATCGAGGTATTAAAGTAGTGCGCGAGAAGGTCAAGAGCTTCGCCCAGGGA 144005 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 | || | || ||| | ||| ||||| |||||| || | | || |||||||| Sbjct 144006 GCCATCA-GCAGTGCCAGC--GGCCTACCGCCCTTCAAGATCATCGTGCTAGACGAGGCC 144062 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| ||||||| | ||||||||||| || || || || | |||||||| |||| Sbjct 144063 GACTCCATGACCGGAGACGCGCAGTCTGCGCTGCGTCGTATGATGGAGAACTACTCGAAG 144122 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTT 254355 || || || || ||||| | ||||||||||| |||| ||||| | || |||| | Sbjct 144123 GTCACTCGCTTCTGCCTCATTTGCAACTACGTGAGTCG--CATCATTGAGCCCGTGGCCT 144180 Query 254356 CTCGGTGCGCCAAGTTTCGATTC 254378 | || ||||| ||||| || ||| Sbjct 144181 CGCGATGCGCAAAGTTCCGCTTC 144203 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 58005 ACGCCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGC 58064 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | || ||| | |||| ||||| Sbjct 58065 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGA 58124 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 || |||| | ||| |||||||||| |||||||| Sbjct 58125 GAGTACAGCAGGCGGTCAGCCACAAACTCGATGTACT 58161 >seq439 Length=25118 Score = 118 bits (130), Expect = 2e-21 Identities = 643/1019 (63%), Gaps = 62/1019 (6%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCA-ACTTCGT 248519 |||||||| ||| |||||||||||| |||||||| || || || ||||| ||| ||| Sbjct 19650 TTCGACAAGATCACGGCGCGCATCACCAAGCTCTGCTACGG-CTTAAACCCGGACTACGT 19592 Query 248520 CGAT--CATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577 || ||| | ||| ||||||| || | ||||||| ||| |||| || || ||| Sbjct 19591 GGACGCCATCAAG--ATCTCCCAGAAGGTCGTGGCGGGCGTGTACCCCGGTGTGACCACG 19534 Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGA 248636 | || || ||| | || || ||||| || |||||| | | ||| ||||| || Sbjct 19533 TCGGAGCTAGACGAACTGGCGGCCGAGACTGCCGCGTACCAGAGCAC-GCAGCACCCGGA 19475 Query 248637 CTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTC 248696 || ||| |||||| | | | || || ||||| | || ||||| | ||||| || Sbjct 19474 CTTCTCCAAGCTGGCGGCGCGTATTGCGGTCTCCAATCTGCACAAGAACACGAACAAGGT 19415 Query 248697 GTTCGTCGAAACCATGGC--TGACCTACATGC----CTATGGGA---------------- 248734 ||| || | ||| | || | ||| | | | | || Sbjct 19414 CTTCAGTGACAACATCGACGTGTTCCACAAGAACGTCCACGAGAAAACGGGTGCTGCCGC 19355 Query 248735 -----TGGTCGCCGATGACGT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGA 248786 || |||| || ||||| | ||| ||| || ||| |||| | | ||| | Sbjct 19354 GCCCCTGATCGCTGACGACGTGTACGACATCGTGATGCAGAACAAGGACGAGCTCA---A 19298 Query 248787 CGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGA 248846 | || ||| | ||| | || || |||||||| | ||| | ||||| || |||| Sbjct 19297 CTCGGCCATTATCCACGACCGGGACTTCGAGTACGACTACTTCGGCTTCAAGACCTTGGA 19238 Query 248847 GAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGAT 248906 || | || ||| || | ||||||| | |||||||| || || ||| | || Sbjct 19237 GAGAGGATACCTCTTCCGTGTCAATGGCAAAGTGGTGGAACGTCCGCAACAGATGATTAT 19178 Query 248907 GCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGG 248966 ||| |||||| |||| || |||||| |||||| || | || ||||||||| | Sbjct 19177 GCGCGTGGCTCTCGGTATCCACAAGAGTGACATCAAGGCAGCTCTGGAGACGTAC---GA 19121 Query 248967 AATGAGTGAACGCTGGA-----TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC- 249020 ||| || ||| | | | || || || || |||||||| ||||| || ||||| Sbjct 19120 GCTGA-TGT-CGCAGAAGTTTTTCACTCACGCTACCCCGACGCTGTTCAATGCTGGTACA 19063 Query 249021 ---CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 || | |||| || ||| ||||| || | || ||||| || ||||| |||| Sbjct 19062 CCACGACCGCAAT----TGTCCTCTTGCTTCCTGTTGGCGATGCAGGATGACTCGATCGA 19007 Query 249078 CGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGG 249137 ||||| || ||||| | || ||| || || || || | || || || || || Sbjct 19006 GGGCATCTACGACACCTTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGGAGGTATTGG 18947 Query 249138 TCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAG 249197 | | ||| ||||| |||| | |||||| || || ||||| | Sbjct 18946 CATTAGTATGCACAATATCCGTGCGACGAACAGCTACATCCGCGGCACGAATGGTTCCTC 18887 Query 249198 TGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGC 249257 |||| || | ||| | | || ||| | ||||| | | | | |||||| Sbjct 18886 CAATGGAATTATCCCCATGTTGAGAGTCTTCAATGATACCGCTCGCTACGTGGACCAGGG 18827 Query 249258 CGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATT 249314 || || || ||||| || |||||||| || |||| ||||||||||||| | || Sbjct 18826 AGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGCACGCCGATGTGTT 18767 Query 249315 GGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTT 249374 ||||||||||| | ||||| |||| ||||||||| | || |||||| | || Sbjct 18766 CGAGTTCCTGGATCTCCGCAAGAATCACGGTAACGAGCTCCACCGTGCTCGTGACTTGTT 18707 Query 249375 CTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 ||||| ||||||| |||| | |||||| | || ||||| | ||| | |||| Sbjct 18706 CTACGCATTGTGGGTGCCCGATCTCTTCATGAAAAGGGTGGAGGCCAATGGCAAGTGGA 18648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073728401420416