Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq439 143 3e-29 >seq439 Length=25118 Score = 143 bits (158), Expect = 3e-29 Identities = 781/1237 (63%), Gaps = 14/1237 (1%) Strand=Plus/Plus Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAA 62740 |||||| || ||||| || ||||| ||||| || || || || | | |||| || || Sbjct 18082 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAA 18141 Query 62741 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCT 62800 ||||| || | ||||| |||||||| || | || |||||||| ||||||| || | Sbjct 18142 CGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCG 18201 Query 62801 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62860 || | | | || || | ||| || | || || || || | || || | || Sbjct 18202 GTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTT 18261 Query 62861 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA-TCAAATCGCC 62919 || ||||| | | || |||||||| || | ||| || | | | ||| | || Sbjct 18262 GTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAACTCC 18321 Query 62920 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 | || || ||| || | || ||||| |||| ||| ||||| || || |||| | Sbjct 18322 CTCCTCC-ACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGG 18380 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 | || || | || | |||| ||| | ||||| | ||| || || | || | Sbjct 18381 GAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCT 18440 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 | || || || |||| || ||||| || || ||||| || ||| ||||||| Sbjct 18441 GCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAA 18500 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 |||| | || | ||||| ||| | | || | || || || | || | | | Sbjct 18501 TCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGG-GCGTTGATGGTC--TTGCGAGCAC 18557 Query 63159 --CTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 | ||| | ||||| | ||| | || || ||||| || ||||| | || Sbjct 18558 GCCCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCGTA 18615 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 | || |||| ||||| ||||| | ||| ||||| || | ||| ||| | ||| Sbjct 18616 GAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTT 18675 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGT 63333 ||| |||||||| || | ||| | || || || || || | | | || ||||| Sbjct 18676 CATGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTCGT 18734 Query 63334 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63393 | || |||||| ||||| |||||| | | | ||| | |||||||| |||| || Sbjct 18735 TACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGT 18794 Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453 | ||||| | || || ||| ||||||||| || | ||| | |||||| | || Sbjct 18795 AGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCAT 18854 Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 | | ||||||||||| || ||||| || || || |||||| || ||| ||| |||| Sbjct 18855 TGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGC 18914 Query 63514 CTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63573 | ||||| ||||| || | || || || || ||| || ||||| Sbjct 18915 TGTTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGC 18974 Query 63574 ATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 | || || | || || ||||| |||||||| || || ||||| ||| | | Sbjct 18975 AGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACA 19034 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 | || || |||| ||| | || | || || ||||| || | || || | ||||| Sbjct 19035 GGAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGT 19094 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | || || | || | || | || | ||||||||| | ||||| | || || | | Sbjct 19095 GAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCT 19154 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 || || || | || || ||||| | ||| || || || | ||| || | |||| | Sbjct 19155 TGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCAT 19214 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | | || | ||| | | ||||| || || || || || |||| ||| |||| Sbjct 19215 TGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGT 19274 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | || |||| ||||| |||| ||||||| ||||| Sbjct 19275 CCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795855547360