Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq439 150 2e-31 seq12 136 5e-27 >seq439 Length=25118 Score = 150 bits (166), Expect = 2e-31 Identities = 782/1238 (63%), Gaps = 16/1238 (1%) Strand=Plus/Plus Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533 |||||| || ||||| |||||||| ||||| || || || || | | |||| || || Sbjct 18082 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAA 18141 Query 65534 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 65593 ||||| || | ||||| |||||||| || | || |||||||| ||||||| || | Sbjct 18142 CGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCG 18201 Query 65594 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 65653 || | | | || || | ||| || | || || || || | || || | || Sbjct 18202 GTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTT 18261 Query 65654 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA-TCAAA--TCG 65710 || ||||| | | || |||||||| || | ||| || | | | ||| || Sbjct 18262 GTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAACTCC 18321 Query 65711 CTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 65770 ||| || | | ||| || | || ||||| |||| ||| || || || || |||| Sbjct 18322 CTCCTCCA---CGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATC 18378 Query 65771 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 65830 | | || || | || | |||| ||| | ||||| | ||| || || | || Sbjct 18379 GGGAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTT 18438 Query 65831 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890 || || || || |||| || ||||| || || ||||| || ||| ||||| Sbjct 18439 CTGCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTC 18498 Query 65891 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC 65949 |||||| | || | ||||| ||| | | || | || || || | || | | Sbjct 18499 AATCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGG-GCGTTGATGGTC--TTGCGAGC 18555 Query 65950 TCTT--TTCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 66005 | ||| | ||||| | ||| | || || ||||| || ||||| | | Sbjct 18556 ACGCCCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCG 18613 Query 66006 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 66065 | | ||||||| ||||| ||||| | ||| ||||| || | ||| ||| | | Sbjct 18614 TAGAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTT 18673 Query 66066 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCG 66125 ||||| |||||||| || | ||| | || || || || | | | || |||| Sbjct 18674 TTCATGAAGAGATCGGGCACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCTCG 18733 Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || |||||| ||||| |||||| | | | ||| |||||||| |||| | Sbjct 18734 TTACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGG 18793 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || ||||| | || || ||| ||||||||| || | ||| | |||||| | | Sbjct 18794 TAGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCA 18853 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || | ||||||||||| || ||||| |||||||| | |||||| || ||| ||| ||| Sbjct 18854 TTGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAG 18913 Query 66306 CTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 || | ||||| ||||| || | || || || || ||| || ||||| Sbjct 18914 CTGTTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATG 18973 Query 66366 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 66425 | || || | || || || || ||||||||||| || |||||| ||| | Sbjct 18974 CAGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAAC 19033 Query 66426 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 || || || |||| ||| | || || || ||||| || | || || | |||| Sbjct 19034 AGGAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCG 19093 Query 66486 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 || || || | || | || | || | ||||||||| | ||||| | || || | Sbjct 19094 TGAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTC 19153 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 | || || || | || || ||||| | ||| || || || | ||| || | ||| Sbjct 19154 TTGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCA 19213 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 || | || | ||| | | ||||| || || || || || |||| ||| ||| Sbjct 19214 TTGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAG 19273 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 || || |||| ||||| |||||||||| | ||||| Sbjct 19274 TCCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 >seq12 Length=196586 Score = 136 bits (150), Expect = 5e-27 Identities = 372/563 (66%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||||||| ||| | |||||||| | ||||| | ||||| || || | || Sbjct 58305 CACGCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGA 58364 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||||| Sbjct 58365 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGATCCCGAAAAGAA 58423 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCACTGTCATGT- 36334 ||| || || || || || || |||| || | ||| | || | ||| | || Sbjct 58424 AATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTC 58483 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 |||| | | ||||| | |||||||| | ||||| || || ||||| |||||| Sbjct 58484 ACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCACG 58543 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 | || | || || ||| | | || || | || || || || | || || | Sbjct 58544 CAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGAC 58603 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||||| |||||||| |||||||| || || || |||||||| || | ||| || | | Sbjct 58604 CTCCGAGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCAC 58663 Query 36514 CTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 ||| || || | | || |||| || | || || ||||| || ||||| ||||| Sbjct 58664 CTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCA 58721 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 || || || || | || || || || |||| ||||| || || || ||| Sbjct 58722 GCGAAGAAAGCGAGCACGTGCTTGATGAAATGGCGCTCGTTATCCGTGAGGTTGCCCCAG 58781 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 || || | || | | ||| | || || | ||||| || || ||||| ||||| Sbjct 58782 TCCTTCAGGTCGTGCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTC 58841 Query 36692 TTATACATATTCCAGATGTCATG 36714 || ||||| | ||| | ||||| Sbjct 58842 TTGTACATCTGCCACACCTCATG 58864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658150076584080