Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq439 165 1e-35 >seq439 Length=25118 Score = 165 bits (182), Expect = 1e-35 Identities = 474/724 (65%), Gaps = 4/724 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 || ||||| || ||||| ||| | || | ||||||| |||||| ||||| | ||| Sbjct 18590 TCAAACTCTTCACCCCA-GCACTCGTAGAGTCCAGGAGCTTCATTAGGACAGAACAAACT 18648 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 72061 ||||| |||| | | || | |||||| |||||||| || | ||| | || || || Sbjct 18649 CCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAATGCGTAGAA 18708 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 || || | | | || |||||| || |||||| ||||| |||||| | | Sbjct 18709 CAAG-TCACGAGCACGGTGGAGCTCGTTACCGTGATTCTTGCGGAGATCCAGGAACTCGA 18767 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||| | |||||||| |||| ||| ||||| | ||| || ||| ||||| Sbjct 18768 ACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTC 18827 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||| | |||||| | ||| | ||||||||||| || ||||| ||||||| Sbjct 18828 CCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAATTCCATTGG 18887 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | | |||||| || ||| ||| ||||| | ||||| |||||| || | | Sbjct 18888 AGGAACCATTCGTGCCGCGGATGTAGCTGTTCGTCGCACGGATATTGTGCATACTAATGC 18947 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || ||| || ||||| | || || | || || || || |||||||||| Sbjct 18948 CAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTAGATGCCCT 19007 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || |||||| ||| | || || || |||| ||| | || || | Sbjct 19008 CGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCGTGGTGTAC 19067 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||||| || | || || | |||||| || || | || | |||| || | ||||| Sbjct 19068 CAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAAAAACTTCTGCGACATCAGCTCGTACG 19127 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 |||| | ||||| | || || | | || || || | || || ||||| | ||| | Sbjct 19128 TCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCACGCGCATAATCATCT 19187 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 | || || | ||| || | ||| ||| | || | ||| | | ||||| || | Sbjct 19188 GTTGCGGACGTTCCACCACTTTGCCATTGACACGGAAGAGGTATCCTCTCTCCAAGGTCT 19247 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661 | || || || |||| ||| ||||| || |||| ||||| |||| ||||| | | Sbjct 19248 TGAAGCCGAAGTAGTCGTACTCGAAGTCCCGGTCGTGGATAATGGCCGAGTTGAGCTCGT 19307 Query 72662 CCTT 72665 |||| Sbjct 19308 CCTT 19311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671116028919120