Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12 190 3e-43 seq55 165 1e-35 seq249 114 2e-20 seq439 96.9 5e-15 seq1848 87.8 3e-12 >seq12 Length=196586 Score = 190 bits (210), Expect = 3e-43 Identities = 592/899 (66%), Gaps = 58/899 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | ||||| | ||| | |||||||| ||||| |||| ||||| Sbjct 58882 CTCTTCCCCATCCAGGAGCATGAGGTGTGGCAGATGTACAAGAAGGCGGAGGCTTCCTTC 58823 Query 125055 TGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||||| || ||| | ||||| || || | ||||| | || |||| | | | || Sbjct 58822 TGGACGGCTGAGGAGCTTGATCTCGTGCACG-ACCTGAAGGACTGGGGCAACC---TCAC 58767 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || | ||||| | || || |||| | | || ||||| || | | ||| || || Sbjct 58766 GGATAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTTCGCTGCCAGCGACGGTAT 58707 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCG 125231 ||| ||||| || ||| | || || || ||| ||| || | || || | ||| Sbjct 58706 CGTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAGGTGCAGGTGCCTGAAGC-TCG 58650 Query 125232 -TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| ||||| ||||| || ||||||||| | |||||||| | ||||| || Sbjct 58649 CTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATTCACTCGGAGGTCTACTCGCTGCT 58590 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAA----CACATGCTCTTTAACGCAATCG 125346 || |||| |||||| || | || | || ||| | || | || |||| Sbjct 58589 CATCGACACGTACATCAAGGACAC-CATTGAGAAGGACCACCTTCTGCGT---GCTATCG 58534 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || | || | | | | || |||||| | |||| | ||||| || Sbjct 58533 AGACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGCGTG 58474 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| || ||||| || | ||||| || ||||| || || |||||||| |||||||||| Sbjct 58473 TGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTCGG 58414 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 58413 GATCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTC 58355 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 |||||| | || || ||||||||| | ||| || || || || |||| | Sbjct 58354 TCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTGCCTCCTGTAT 58295 Query 125586 --------CG-CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAAC 125636 || |||| | |||| | ||| || | || | |||| | || |||| Sbjct 58294 TCCAAGCTCGTCAACAAGCTGC---CGGAGAGCCG---CATCCATGAGATCGTTCGCAAC 58241 Query 125637 ATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AG 125695 || ||| ||| || || |||||| | || || || ||||| || Sbjct 58240 ------------GCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAG 58193 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | ||||||||||||||| ||| |||||| ||||||| ||||||||||| || || || Sbjct 58192 C-TGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCT 58134 Query 125756 ACTGTACGAGTTGATTGGCCG----CAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811 |||||| | ||| || |||||| ||| |||||||||| || || || | | Sbjct 58133 GCTGTAC----TCTCTGGGCGTGTCCAAGATCTACCACGCCAAGAACCCGTTCGACTGGA 58078 Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || || ||| |||| ||||||||||| ||||||||| || |||||||| Sbjct 58077 TGGACATGATCTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 58019 >seq55 Length=127487 Score = 165 bits (182), Expect = 1e-35 Identities = 582/892 (65%), Gaps = 44/892 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| | |||||||| || || |||| || || Sbjct 36325 CTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCCGAGGCATCTTTC 36266 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| || |||| ||| | |||||| |||| |||| | | |||| Sbjct 36265 TGGACTGCCGAGGAACTCGACCTGGTACACGACCTGAACGACTGGGCCAAGC---TGACG 36209 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | |||||| | || || |||| | | ||||| || || | || || ||| Sbjct 36208 GACAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTTCGCAGCAAGTGACGGTATC 36149 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCA--TTCCAGAGGTGTC 125230 || ||||| || || | || || || ||| ||| | ||| | || |||| Sbjct 36148 GTTAACGAGAACCTA--GCCATGAACTTCAGCAATGAGAT--CCAGGTGCCCGAGGCCCG 36093 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| ||||| ||||| || |||||||| | ||||||||| | ||||| || Sbjct 36092 CTGCTTCTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGAAGTTTACTCCCTGCT 36033 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACG--CAATCGAC 125348 ||| |||| |||||| || | || | | | || ||| || | ||||| Sbjct 36032 GATCGACACGTACATCAAGGA--CACAGTCGAGAAAGATTATCTGCTGCGTGCCATCGAG 35975 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 ||| | |||| | | | || ||||| | |||| | ||||| ||| | Sbjct 35974 ACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGATCCTCGTGTG 35915 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 ||||| ||| | || | ||| |||| ||||| || || |||||||||||||| ||||| Sbjct 35914 TCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCATCTTCTTCTCGGGA 35855 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||| ||| | ||||| ||||||||||||||||| |||||||| || || | | Sbjct 35854 TCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTC 35796 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TC 125586 |||||| | || || |||||||| | ||| || || ||| || ||| || Sbjct 35795 GAACGAGATGATCAGCCGGGACGAGGGAATGCACACGGATTTCGCCTGCCTCATGTACTC 35736 Query 125587 GCAACTATCTGCGTCC-CGAG-TGC---AGATCCAGCG---ATGAAAAGGTCATCAACAT 125638 | | || ||| | || ||| ||| || ||| | |||| ||||| | Sbjct 35735 GAAGCT-----CGTGAACAAGCTGCCGGAGAGCC-GCGTACACGAAA---TCATCCGC-- 35687 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 || || || | || || || ||||| | ||| || || || || | Sbjct 35686 -------GACGCTGTCACCATTGAGCACGAGTTCGTGTGCGACTCTCTCCCTGTGGAGTT 35634 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||| |||||||||| ||| |||||| ||||||| ||||| ||||||||||| || || Sbjct 35633 GATCGGCATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGCCTGCT 35574 Query 125759 GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 ||| || || |||||||||||||| |||||||| || || | ||| || Sbjct 35573 TTACTCACTGGGTGTGTCCAAGATTTACAACGTGAAGAATCCATTCGACTGGATGGACAT 35514 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||| |||||||||||||| |||| | |||||| Sbjct 35513 GATCTCGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTAC 35462 >seq249 Length=42622 Score = 114 bits (126), Expect = 2e-20 Identities = 219/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 31556 GAAGCCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATACGGTCGTGCGG 31615 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | || |||||||||||||||||||| |||||| |||||||| || || Sbjct 31616 GCGCAGCAGACCCGTGTACACGGCAAAGTTGGCGGGCGAGCCAGAGTACGGCTGCACGTT 31675 Query 127563 CACTCCCCA-TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 || ||||| ||| | ||| || | | || | || |||||||| || | Sbjct 31676 GACGCCCCACTTCTCA-GCGTCCAGGCCGTAGGCCGTAAGGGCGCGCTGCTGGCACAGGA 31734 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTC 127679 ||||| ||||| | ||||||||| || ||||| ||| ||| ||| ||||| Sbjct 31735 TCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGGCCCTC 31792 Query 127680 CGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTT 127739 || |||||||||| |||| ||||| | || ||| || || | ||| || ||||| Sbjct 31793 CGCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCGCGAGACGTGAAGTT 31852 Query 127740 TTCCGATGCGATCAACTC 127757 || || ||||| | ||| Sbjct 31853 CTCGGACGCGATGAGCTC 31870 >seq439 Length=25118 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || || |||||||| | || Sbjct 17655 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTGCTGGACCTGTCTGCCGACCGTGGC 17596 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || | ||||| || || || Sbjct 17595 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACGATTAGCAAG 17536 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 17535 CTCACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 17480 >seq1848 Length=2031 Score = 87.8 bits (96), Expect = 3e-12 Identities = 277/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || ||| || || || ||||| || ||||| ||||||||| | |||| || |||||| Sbjct 757 GAGAAGTTGGGGACCTCGGGCCGGTCTACGGTTTCCAGTGGCGTCACTTTGGTGCCAAGT 698 Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCAT 70176 | || ||| | | || || || ||||| ||||| || || |||| || | | || Sbjct 697 ACACGGATATGCACG-CTGATTACTCTGGTCAAGGTGTGGACCAGCTTGCTGA-AGTGAT 640 Query 70177 TGACACTCTCAAG-ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTG 70235 ||| | | || |||||||| || | || || || ||| | ||||| |||| Sbjct 639 C-ACAAAATTGCGTACGAATCCAACTGACCGCAGAATTGTGTTGTCGGCGTGGAACCCTG 581 Query 70236 CAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTAC 70294 | ||| | || | ||||| | || || || ||| |||| || ||||| ||| | Sbjct 580 CTGATCTTAACGAGATGGCGTTGCCTCCCTGCCACATGTTCTGC-CAGTTCTACGTGGCT 522 Query 70295 GATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 ||||| | ||||| ||| ||||| || | ||||||||||| || || || || Sbjct 521 GATGGGGAGTTGTCCTGCCAGATGTACCAACGTTCGGCCGACATGGGACTTGGAGTGCCA 462 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 || ||||| || || || | || | || | || | || || | | || ||||| Sbjct 461 TTCAACATCGCCAGTTACGCACTGCTTACACGACTGGTGGCACAAGTGGCTGGGCTGAAG 402 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | |||||| || || ||||||||| || || |||||| | || ||| | ||||| Sbjct 401 CCTGGCGAGTTTGTCCATGTCATTGGCGATGCGCATGTGTATCTGAACCACGTTGAGCC 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741033614931120