Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq168 118 2e-21 seq55 86.0 1e-11 >seq168 Length=56023 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || |||||| ||||| | || || Sbjct 51937 AAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATC 51878 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 51877 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 51818 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || ||| || || || || || ||||| || Sbjct 51817 CTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGT 51758 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGTATT 104574 ||| ||||| || || || || || |||||||| |||| |||||| || Sbjct 51757 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTTGTCTACAGTGTT 51710 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||| || |||||| ||||| | || || Sbjct 52165 AAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATC 52106 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 52105 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 52046 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || ||| || || || || || ||||| || Sbjct 52045 CTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGT 51986 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || | || || || || |||||||| Sbjct 51985 CTTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || |||||| ||||| | || || Sbjct 52393 AAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATC 52334 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 52333 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 52274 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || ||| || || || || || ||||| || Sbjct 52273 CTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGT 52214 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || | || || || || |||||||| Sbjct 52213 CTTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 >seq55 Length=127487 Score = 86.0 bits (94), Expect = 1e-11 Identities = 283/436 (65%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || || ||||| |||| ||||| |||||||||||||| || |||| ||| ||| | Sbjct 36178 CTCGCCTTTTTCGCAGCAAGTGACGGTATCGTTAACGAGAACCTAGCCATGAACTTCAGC 36119 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | ||| | ||| | || || ||| | || || ||||| ||||||||||| || || ||| Sbjct 36118 AATGAGATCCAGGTGCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATAGCCATTGAGAAT 36059 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAG 269035 || || || || | ||| || | || || || || || | || | ||| Sbjct 36058 ATCCACTCGGAAGTTTACTCCCTGCTGATCGACACGTACATCAAGGACACAGTCGA---- 36003 Query 269036 AAAAGACTATTTTC----TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 ||||| ||| | | | | || ||| || || |||||| ||| || | | | Sbjct 36002 GAAAGATTATCTGCTGCGTGCCATCGAG-ACGATCCCGTGTGTGCAAAAGAAGGCGAACT 35944 Query 269091 GGGCTCTGAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTG 269147 ||||||| | ||| | | | | | ||||| || || | | || || | Sbjct 35943 GGGCTCTCAGGTGGTGTGATCCTCGTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCG 35884 Query 269148 CCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAA 269207 | || || || || || ||||| ||||| || || | | ||||| ||| | ||||| Sbjct 35883 CAGCAGTGGAGGGCATCTTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGC 35824 Query 269208 GAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTAC 269267 | ||||| ||||| || | | ||||| ||||| |||| ||| ||||||| || | | Sbjct 35823 GCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGC 35764 Query 269268 ACTGCGACTTCGCTTG 269283 || || ||||| || Sbjct 35763 ACACGGATTTCGCCTG 35748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151357654169496