Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1294 136 4e-27 seq168 100 3e-16 seq122 84.2 2e-11 >seq1294 Length=4314 Score = 136 bits (150), Expect = 4e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || ||||| ||||| ||| | |||||| ||||| || | ||| || |||||| Sbjct 4291 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4232 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||||||||||| || ||| | ||||| |||| ||||| || |||| Sbjct 4231 A--GCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAG 4174 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | ||| || ||| ||| | ||| || ||| | | || | Sbjct 4173 GAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCA 4114 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| | |||||| || || || || | ||| ||||||||||||||||||| Sbjct 4113 CGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGC 4063 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || ||||| ||||| ||| | |||||| ||||| || | ||| || |||||| Sbjct 4063 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4004 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||||||||||| || ||| | ||||| |||| ||||| || |||| Sbjct 4003 A--GCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAG 3946 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | ||| || ||| ||| | ||| || ||| | | || | Sbjct 3945 GAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCA 3886 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | |||||| || || || || | ||| ||||| ||||||||||| Sbjct 3885 CGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 3837 >seq168 Length=56023 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || || |||| |||| | |||||| Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | ||||| || ||||| || || || ||||| | Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||||||| | ||| | || | | || ||||| | || || || || Sbjct 51814 AATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCTT 51755 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| Sbjct 51754 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || || |||| |||| | |||||| Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | ||||| || ||||| || || || ||||| | Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||||||| | ||| | || | | || ||||||| || || || || Sbjct 52042 AATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTT 51983 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||||||||||| Sbjct 51982 ACCCGTCAACGTCTTGACGAAGATCTGCATGC 51951 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || || |||| |||| | |||||| Sbjct 52390 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52331 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | ||||| || ||||| || || || ||||| | Sbjct 52330 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52271 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||||||| | ||| | || | | || ||||||| || || || || Sbjct 52270 AATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTT 52211 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||||||||||| Sbjct 52210 ACCCGTCAACGTCTTGACGAAGATCTGCATGC 52179 >seq122 Length=66504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || || || ||||| ||| Sbjct 11047 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTG 10988 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 10987 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATG 10928 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || |||||||||||||||||| || Sbjct 10927 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGATT 10889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275722746320