Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq381 152 8e-33 seq95 141 1e-29 seq204 118 2e-22 seq722 80.6 4e-11 >seq381 Length=37342 Score = 152 bits (168), Expect = 8e-33 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || ||||||||||| |||||| Sbjct 7407 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 7466 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 7467 CGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 7526 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | |||||| ||| ||| |||| || | || ||| || ||| Sbjct 7527 CGTGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTGAG 7586 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| ||||| || || || ||||||| |||| || || | || ||||| ||| Sbjct 7587 CACGCTCGTCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGGC 7646 Query 16673 CG 16674 || Sbjct 7647 CG 7648 >seq95 Length=75015 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 44913 CGCCAAGCGTCACCGCAAGGTTCTTCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 44854 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | | || || |||| Sbjct 44853 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATTTACGAGGAGAC 44794 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | | ||| || || Sbjct 44793 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTGACCTACACGGA 44734 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| | || || || | || ||||| || Sbjct 44733 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTTGTGTACGCCCTCAAGCGTCAGGG 44674 Query 16672 CCG 16674 ||| Sbjct 44673 CCG 44671 >seq204 Length=49849 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 36980 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 36921 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || |||||||| |||| || | |||| || |||| Sbjct 36920 CCGCCGTCTCGCACGCCGTGGCGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 36861 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||| | ||| ||| |||| || | || || || || Sbjct 36860 ACGCGGAGTGCTCAAGGTTTTCTTGGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 36801 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||| || ||||| || | ||||| |||| || || | || || ||||| Sbjct 36800 GCACGCTCGACGCAAAACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGCGCCAAGG 36741 Query 16672 CCG 16674 || Sbjct 36740 ACG 36738 >seq722 Length=12221 Score = 80.6 bits (88), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 16438 GCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 ||||||||||| ||||| |||| || ||||| ||||||||||||||||||| ||||| | Sbjct 1052 GCGTCATCGCAAGATCT-TTCGCGACAACATACAAGGAATCACCAAGCCAGTGATCCGCC 994 Query 16497 GTCTGGCTCGTCG 16509 | || |||||||| Sbjct 993 GACTTGCTCGTCG 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072674684066