Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq439 257 4e-63 seq12 107 5e-18 >seq439 Length=25118 Score = 257 bits (284), Expect = 4e-63 Identities = 970/1507 (64%), Gaps = 15/1507 (1%) Strand=Plus/Minus Query 363377 TCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATG 363436 ||||||| || ||||| | ||||| |||||| | ||||| | ||| |||||| Sbjct 19271 TCGAGTACGACTACTTCGGCTTCAAGACCTTGGAGAGAGGATACCTCTTCCGTGTCAATG 19212 Query 363437 GTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCC 363496 | | | || ||||| ||||| || ||| | ||||| || ||| | |||||||| Sbjct 19211 GCAAAGTGGTGGAACGTCCGCAACAGATGATTATGCGCGTGGCTCTCGGTATCCACAAGA 19152 Query 363497 CGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATT-CACGCA 363554 || | | || || | || || || |||| | || || || || ||| || Sbjct 19151 GTGACATCAAGGCAGCTCTGGAGACGTACGAGCTGAT--GTCGCAGAAGTTTTTCACTCA 19094 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 ||| || || || ||| ||||||||| || | || || |||| |||||||| || Sbjct 19093 CGCTACCCCGACGCTGTTCAATGCTGGTACACCACGACCGCAATTGTCCTCTTGCTTCCT 19034 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 | ||| |||| || || |||||||| |||| ||||| | ||| | ||||| Sbjct 19033 GTTGGCGATGCAGGATGACTCGATCGAGGGCATCTACGACACCTTGAAGCAGTGTGCCTG 18974 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 || |||||| || || || ||||| | || |||||| | ||||| |||||| Sbjct 18973 CATCTCCAAGTGGGCTGGAGGTATTGGCATTAGTATGCACAATATCCGTGCGACGAACAG 18914 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| |||||||| || | ||| ||||| | | |||||| | | || || | Sbjct 18913 CTACATCCGCGGCACGAATGGTTCCTCCAATGGAATTATCCCCATGTTGAGAGTCTTCAA 18854 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 |||| || | ||||| |||||||| ||||| |||||||| || | || || || || Sbjct 18853 TGATACCGCTCGCTACGTGGACCAGGGAGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTA 18794 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAA 363913 || ||||| || |||||| | || ||||| || || ||||| || || ||||| || Sbjct 18793 CCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTGGATCTCCGCAAGAATCACGGTAA 18734 Query 363914 AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGA 363973 ||| ||||| ||||| ||||||| ||| | ||||| | || | || |||| Sbjct 18733 C-GAGCTCCACCGTGCTCGTGACTTGTTCTACGCATTGTGGGTGCCCGATCTCTTCATGA 18675 Query 363974 AGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTT 364033 | | |||||||| | || ||| | || || || | ||| ||| || || | Sbjct 18674 AAAGGGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCTAATGAAGCTCCTGGACTCT 18615 Query 364034 CCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 ||| |||||||| || | || | || ||||| ||||| || ||| || | Sbjct 18614 ACGAGTGCTGGGGTGAAGAGTTTGAGACCCTCTACGAGAAGTACGAGAAGGAAGGGCGTG 18555 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 |||| ||||| || ||| ||| |||| ||||| || ||| | || | |||||||| | Sbjct 18554 CTCGCAAGACCATCAACGCCCAGCAGCTGTGGTTCGCGATCCTTGACGCCCAGATTGAAA 18495 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 | || || | ||| | ||||| || | |||||||| |||||||||||| ||| Sbjct 18494 CGGGTGTGCCTTTCATGCTCTACAAGGACGCAGCTAACCGCAAATCCAACCAGCAGAACC 18435 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 | ||||| || | || ||| | || ||| | || || ||||| ||||||| | Sbjct 18434 TGGGTACGATCCGTTCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTCCCGATG 18375 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTT 364333 | || || || || | || || ||||||| || ||| || | || || | || Sbjct 18374 AAGTGGCTGTGTGCAATTTGGCCTCTGTCGCGCTCCCCAAGTTCGTGGAGGA-GGGAGTT 18316 Query 364334 TTGA-CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTT 364392 || | | ||||| | || || || || | | | || | ||||| ||||||| Sbjct 18315 TTCAGCTACCAGAAGCTGTACGAGGTGGTCAAGGTGGTGACGCGTAATCTGAACAAGGTC 18256 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCC 364451 |||||| || || || || | || || | || || || ||||| || ||||| Sbjct 18255 ATCGACGTCAACTACTA-CCCCGTGGTGGAGGCTCGCAAGTCCAACATGCGCCACCGCCC 18197 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA 364511 | ||| | ||||| ||||| || ||||||| || || || | || | || || Sbjct 18196 CGTCGGTATCGGTGTTCAGGGTCTGGCTGACGCGTTCATTCTGATGAACTATCCGTTCGA 18137 Query 364512 TTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 ||| | | || | | || || ||| | ||||| || || || || | | | | Sbjct 18136 -GAGCCAGCAGGCCAGCGAACTCAACAAGAACATCTTCGAGACCATCTACTACGGTTCCA 18078 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 || | ||| || | || || ||| || || | |||| || | Sbjct 18077 TGGAGACGTCGATGGAGATTGCGAAGGAGTTGGGGCCCTATGAGACGTTCCAGGGCTCGC 18018 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATCTGTCCGAT 364687 | | |||| |||||||| || | ||| || |||| | |||| || | Sbjct 18017 CAGCTAGCAAGGGTGTCTTCCAGTTCGACATGTGGGGCGTGACGCCTTCTTCTGGCCTGT 17958 Query 364688 GGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTA 364747 || |||||| ||| || ||||| | ||||| ||| ||||||||| || | Sbjct 17957 GGGACTGGGCTACCCTCAAGGAGAACGTGATCAAGCACGGTCTTCGCAACTCGCTGCTGG 17898 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 || |||||||| |||||||||||||| |||||||| || |||||||||| |||| | Sbjct 17897 TGGCTCCCATGCCGACGGCTTCTACTGCTCAGATCCTGGGCAACAACGAGTCTATCGAGC 17838 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||| || ||| | || || || || ||| | || || || || | || || | Sbjct 17837 CGTACACGTCCAACATGTACAACCGTCGTGTGCTTGCAGGCGAGTTCACGATCGTGAACA 17778 Query 364868 AGTACCT 364874 ||||||| Sbjct 17777 AGTACCT 17771 >seq12 Length=196586 Score = 107 bits (118), Expect = 5e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 |||||| ||||| |||| || |||| ||| || |||||||||||||| ||| | || || Sbjct 58463 CGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTCGGGATCCTTCTG 58404 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | ||||| ||||| || || || | | ||||| ||||| | || || || ||| | Sbjct 58403 CTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCT 58344 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||| || ||||| | || |||||||| ||||| Sbjct 58343 CATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTG 58305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303307476759884