Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq439 154 1e-32 seq168 138 1e-27 seq1294 132 5e-26 seq122 116 3e-21 seq228 111 1e-19 >seq439 Length=25118 Score = 154 bits (170), Expect = 1e-32 Identities = 315/462 (68%), Gaps = 7/462 (2%) Strand=Plus/Plus Query 145033 GATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACG 145092 ||||| |||| || | ||||| || |||| | |||||||| || | ||||||||| Sbjct 17755 GATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACG 17814 Query 145093 CAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGT 145152 |||| ||| |||||| | || || | ||||||||| ||||||||||| ||||| || Sbjct 17815 GTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGT 17874 Query 145153 CGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTC 145212 | || || |||||| ||||||| | || ||||| || |||||||| | | || Sbjct 17875 AGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTT 17934 Query 145213 TTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTA 145269 ||||| || ||| |||| ||||| || |||| ||| ||||| ||||||||||| | Sbjct 17935 CTCCTTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACGCCCCACATGTCGAA 17994 Query 145270 CTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TT 145328 ||| || | |||| ||| || || ||| || || | || | ||||||| | | Sbjct 17995 CTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACG-TCTCATAGGGCCCCAACTCCT 18053 Query 145329 TGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTG 145387 | || | ||| || | || ||||| | ||| | || || |||||| || | | || Sbjct 18054 TCGCAATCTC-CATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTG 18112 Query 145388 TTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCG 145447 ||||| | || | | ||||||| |||| | || ||| | || || || || Sbjct 18113 TTGAGTTCGCTGGCCTGCTGGCTCTCGAACGGATAGTTCATCAGAATGAACGCGTCAGCC 18172 Query 145448 AGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTG 145489 || ||||| | || | |||| ||| || || ||||||| Sbjct 18173 AGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTG 18214 >seq168 Length=56023 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| || ||||| | || | ||||||||||| ||||||||||| || || Sbjct 52180 GCCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACT 52121 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 52120 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 52061 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||||| | || | | ||| | | ||| | Sbjct 52060 GATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCAC 52001 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | ||||| || ||||| || | || || ||||| ||||||||| Sbjct 52000 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| || ||||| | || | ||||||||||| || |||||||| || || Sbjct 51952 GCCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 51893 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 51892 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 51833 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||||| | || | | ||| | | ||| | Sbjct 51832 GATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCAC 51773 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| ||||| || || || || || || || ||||| |||||||| Sbjct 51772 GTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| || ||||| | || | ||||||||||| || |||||||| || ||| Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| |||||| Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||||| | || | | ||| | | ||| | | Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACG 52228 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || ||||| || | || || ||||| ||||||||| Sbjct 52227 TCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 52180 >seq1294 Length=4314 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| ||||| Sbjct 4064 GCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4005 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 4004 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGG 3945 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || |||||||| | | || | || || | | ||| | Sbjct 3944 AATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCAC 3885 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | ||| || ||||| |||||||| Sbjct 3884 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 3837 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| ||||| Sbjct 4292 GCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4233 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 4232 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGG 4173 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || |||||||| | | || | || || | | ||| | Sbjct 4172 AATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCAC 4113 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || | ||| || || || ||||||||| Sbjct 4112 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 4064 >seq122 Length=66504 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 11082 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 11023 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || ||||||||||| ||||| |||||||||||||| | | Sbjct 11022 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 10963 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 10962 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 10903 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 10902 AGATCTGCATGA 10891 >seq228 Length=47695 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || Sbjct 37678 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 37737 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 37738 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 37797 Query 131128 ATTCCT 131133 |||||| Sbjct 37798 ATTCCT 37803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996503758080